Tfem006760.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- bab1
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000152.1:77799-79458[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-15 6e-12 45.2 0.1 3 45 345 387 343 387 0.92
Sequence Information
- Coding Sequence
- ATGGCCACTCCTTcgcaacagtactgcctgcgctggaacaaccatcgttcgaatctgctgacggtcttcgacgagctccttcagaacgaagcgttcacagatgtgactttggcggtggacggtggtgcctcggtcaaatgccacaagatggtcctcgccgcgtgttcctcctactttcaaaccctcttcatagatctgccctgcaaacatccgatagtggttctcaaagatgtcaaatactcggagataaaggcgatcctggagtacatgtatcgtggagaagtgaatgtcgcacaggagcagctcggtggactgctcaaggttgccgaggtgctcaaggtcaaaggcctcgtcgaggagaacggatcccaaggtcgtcgcgaggaggttgAGACCTCCATGTCTCCACCACCCGCGATCAGCACTAGCACAACCAGCAGTGCGGCTCACAGTAGCGGTCACATCTCGCCCCCGCACTCTACAGGAAGCTCCTTCAATCTCTATGGCAAGTGCCCTGTGGACAGAGGTCAAGGTCGCCTCTCTCTGCCCATGTGGGCACTCTCGGGTATTCCTCTACCTCAGCATCCGTCCTCCAGCCACCAGCCAACTTCCCACCAGACCCAACACTCCACCGTCCTTGGCAGCTCCTACGACAACGGCTTCGAGACGTCACCTCTCAAGCGCAAGAAATTTTCAAATCTAATGATGAACCGAGATACTCCCATTCTAAGAACTGTGCTTGGTCAAGGGCACGCCGACAGCTCCCAGGGCATTCCTCTTCTGCATCCCGACAGCCACGAGGGTCACTTCCGCTCGAGCAGCAATGGATCAGCTAACGACAGTGACCGCCGGAACAGCACCGATTTGCCTCACGGAGAGATTCCTCACAGTCCTTACACGGACATTTCGGTGGTGGACGAGGACGAGAAACAGCCTTCTCCACAGTCGTATGCCAGTGACGCTAAATCAGGGATCGTCAACTACGTGCCTGCCCAGAAGCCAGAGTGGAAGCGTTACAAGCAGTACACGAGGAACGACATTATGTCGGCGATAGAGGCGGTGAGATCGGGAATGAGCGCGTTGCAAGCCGCACGTAAGTACGGCGTGCCTTCGCGCACCCTTTACGACAAGGTGAAGAAGCTGGGCATCACGACGTCCCGTCCCTTTAAGCGTGGGTCGAACGGCAGCGGTGCCTGCTTCCCATACGGTATCGGAGGGAATGCCAACGGCGGTATTTACGGTGGCGGATTGTCCGAAAGCGAGAACGAGAACAGCAATGCTATAGTGGAGAATCCAGGCTCGATACTGGACACGTCTTATGCCAAGGCTGGGGGTAGGGAGATCTCGAGCGAGCGCGAGGCCATATTCGACGTACCACGTTGTAGTCCAAGTCCGGTGATACACTCGATGAAGCACCACGAGCAGGGCAATCTGAGTAGCGACGACCAGGTCGAGGATCTGTCGGTGAGTCGCAAAGCTGATGTGCGCGTGATCGTACCTCCTACGTCGATCGTGAAGGAGGAGGAGCAAGAAGTGTCGCCGGACAATTCGAATCGCAATTGA
- Protein Sequence
- MATPSQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGASVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYSEIKAILEYMYRGEVNVAQEQLGGLLKVAEVLKVKGLVEENGSQGRREEVETSMSPPPAISTSTTSSAAHSSGHISPPHSTGSSFNLYGKCPVDRGQGRLSLPMWALSGIPLPQHPSSSHQPTSHQTQHSTVLGSSYDNGFETSPLKRKKFSNLMMNRDTPILRTVLGQGHADSSQGIPLLHPDSHEGHFRSSSNGSANDSDRRNSTDLPHGEIPHSPYTDISVVDEDEKQPSPQSYASDAKSGIVNYVPAQKPEWKRYKQYTRNDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSGACFPYGIGGNANGGIYGGGLSESENENSNAIVENPGSILDTSYAKAGGREISSEREAIFDVPRCSPSPVIHSMKHHEQGNLSSDDQVEDLSVSRKADVRVIVPPTSIVKEEEQEVSPDNSNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538079;
- 90% Identity
- iTF_01454279;
- 80% Identity
- iTF_01454279;