Tbis007996.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001622.1:28761-33847[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 5.6 7.6 1.9 2 22 151 171 150 174 0.89 2 11 3.9 2.1e+02 2.6 7.1 1 20 174 193 174 195 0.91 3 11 1 56 4.5 1.5 3 23 212 233 211 233 0.85 4 11 0.28 15 6.2 0.3 1 23 328 351 328 351 0.91 5 11 0.5 27 5.4 0.1 2 22 750 770 749 770 0.93 6 11 6.8 3.7e+02 1.9 4.7 1 20 776 795 776 798 0.93 7 11 0.0016 0.089 13.3 0.8 2 23 934 955 933 955 0.97 8 11 2.4e-06 0.00013 22.2 3.4 1 23 961 983 961 983 0.99 9 11 0.00017 0.0091 16.4 0.6 2 23 989 1010 988 1010 0.96 10 11 6.4e-05 0.0035 17.7 1.8 2 23 1017 1039 1016 1039 0.97 11 11 0.0095 0.51 10.9 0.1 3 23 1077 1098 1076 1098 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCGCCTCAAGTTATCACCGAGACCAAACCACGAAAGTTCTCCGTAGAGGTCAAAGTAGAAGCAGTCGACGAGAACAATGAAATAATCCTGAGGAGTGAGTCCGATGATTTGATGATAAAACGAGCTTTGGAAGCGGAAACCGCGGAAATTGCAAGAATATTAGAACAGAAGAAGAATACAAAAGCATTGTTCAATGTAGATGGAGAGCCCGATGATGAAGTCGACAAGTTCTTTATGTCAAATACAAAACACGGGGATATATACATAAAAAGAATGTATTGTGAAATTTGTTCCTTAGAGTTAAATTTAAGCATGAAAGATTTTAAAAGTCATTTAGTGAAAGAACATCCCGACCCGAGAGTATTTGACTTCAAAGTGTTAAATGGCGTAGCGTTTATCTATTTTAACATCAACAAGGATCTGGAAATTCCGTACAACGAGTTGAGATGCTTGAAATGCGACCTGAGGTTCAGTTACCGATTCGCTTGGATGAAACACCACTCGAAAGAGTATCACTACTGTTCCACTTGCGGGTTGTGCTTTCGGAGCTGTAAAGTTTATCGCGAACATGTTTGTGAACTTCAGGATGTAATTTGTTGTGCAGAAGAGGATGATAATATAAACAAATGCATCGTTTGTTCAAAGCAATTCAAGACTGACCATGACCTTTTTGACCACACGGTCAACGTTCACACTGTCAGCTCCACCGAACTGATGCCTGATGTTGATCTGTCTACTTGCAAGGTTTGCAAACAACGGTATCCGGGATTGAAGTCGACACACTTCTGCCCTAAGGCGCCGTTCAAATACGGATGCCAGAATTGCATGCGTCCCTTTCAGAGCCTGCTCATGGTTTATTGTCACAGAAAGGCTTATAAAAAATACAACATGCCGTGCCCTAAATGCAAGAAGATGCTGGAGAGAGATTGTGAAATAGAGAGTCACACCTGCAAAGCCCTTGACAATACAATCATGTTCCAATGTCTCCAGTGCTCGCAGGACTTCAACGACCGCGTTCAAGCTGTCAACCATTTGATTTTTGATCACAAATTCAAGACTACCGCCAACTTTGATGAGCTTCTTTTTAGATATCAAATCGCCACTATCCCAGAATCCCAATCTGACAGTCAAATGACAACCTTATCGAAAATAGATAATTTGAACATTGCAGAGGAAATAAACAATTGCATTGTTGTGATTGAAAATGCTGAGAGCGATTTGCAGAACGAGACAGCCTCGTCTGCGCTTATTCTGCAACAGCTGCTGGATTGCAACACCACTTACACTCCGGAGCCGAGTCATGTGTACATTACGAATGAGAGTGAAGTGGGGGCTCCCGGTGAGTGTGCAATTGAAATCAGTGATGAGGAGGAGATCTGCGAGGAATCTGGAAGTGCTGGAAATGAAAATTCTCCGAAAGCAGAGAAGGAAGAAGATGATGATGTTATGATAGTTGAAACGGAAACTCCGAACCAGGTTCCTGTAATGGATGAAACTACAGTTAATGCAATAAAGGATGAGGTTGTAGATGATGTTTTAAAGAATACAGTGGCAGATGATGTGAGGAAGAAATTTACAAATGATGTAATAAGTGAAATTACACACGATTTATTGGGGGATAAAATTACAAATGTAATGAAGAAAATTACAGTTGATGTATTGAAATATAAAATGGCAGATAAAGTAATGAATAAAATTACAGTCGATGCAATTAAGCGTGAAACTGCAGATGATGTTATGGAGGAAATCACAGATGATGCAATGAGGAGTCAAAGTTATGATGATGTGATGAATCGAATAACAATTGATGTAGTTAAGAGTGAAGCTCCAGGTGATATGATGGAGAAAATGACCAATGATGCCTGGCAGGATGAAACGGCAGTTGATGTAATGAAAGGTACAAGTTATGATGATGTGATGAATCAAATTACAATTGACAAAGTTGAGAGTGAAGCACCAGATGATGTAACAGAGGATAGAAGTCAAGATGATGTAGCGAAGAACGAAATGACACAAGTAGTGAATGATGGTTTATTCATAACTATTAAGACTGAGCCTATAGATGAGCCAATGGAATTGGACGATGTGATAATAGAACCTATGGCAGAGGTTCTCGTTGATAATATCAAAATGGAGCCTCCAGAGGAATGCAACGATGTAGTCATACTGCACGACTGCGATGATCTATTGACCGCTTGTGGTCATAAGACTATAAAGAGGGAAGTGTCCGATTCGGATTTGAAATGTAAACGTTGTTCCGTCACGTTTGATTCCATACAGGATATTATAAACCACATACAGACGAGCGCTTGCAATGCGTACAAATGCTCCTTCTGCAGCCACATCTGCAAGACGCAGGAAGACCATGAAAGGCATATAATTCCTCACATAAGGATGTACTATAATAGAATAAAAATATTCAATGGGAATAGAGAGTTCAAGGCGTTCCGATGCATTCGGTGCTTGAAAGTTGTCCTCGATATTAATCTGACCGAGCATTGGAGGGCTCACGTGAAAAGGAACGCTGCCGGTGTGAGAAGAACTAAGCCTGTCGATGATATTGTATTGACACCTGAAGTAACTGTGAAAAGTGAACCAGTCGATGGTGAAACAAGAGAAGAAAGTGTAGTAGACAAACTTATAGCATGCTTGCTAAAGAAAAGAACGGATATTAAGTACGGAGACAGGTGTTGTGTCGTCTGTAACAAGTTGACATCGCGTGTGAATGACTTTAAACGTCACTGCATCGAGCATTTGCTGGATGATGCGTATAAAAAGAATGGCGTGCTGATCCAGTGCCAAATTTGCAGAGAACAGTTTGACAATTCAACCATGTACAGGCAGCACCTGAGAGAGCATGCCAATTTGCCGGTGTACCAATGCAGGTTGTGTTCGAAGTCTTTCAGTGACTCGAGCAATTATACAAAACACAGGAAGGTGCATAATATTAGCGTTCTGATATGCGATCTGTGTAGTAAGAAGTTTAGTAGCAAAAATATGCTTGTGCAACATATTGAGAGACACGCACAAACTAAACCGGTCCAGTGCAGCCTCTGTCCGCAAGTGTTTCCGTTCGAAAGCAACTTCAACAGGCACATGAAGTCGTGCCACATGCTGACCCCAAAGTTCCACTGCCAGCGGTGCAAGGAGCCGTTCTTCTCGCTCAAACACAAATGGAACCATCTGTGGTCGCAGCATCGTATACGGAAGGTGATGGCTGATTGTCCGTACTGTGGTGCCGGTTTCAGGAAGATGTGGGATGTCAAGTCGCACATCTCGCGCGAGCATGCGGGTATGCCAGCGCCGCCCAAGAGTTATTATAGGACGGCTCCATACGGCTATCGGATCACGGACTAG
- Protein Sequence
- MAAPQVITETKPRKFSVEVKVEAVDENNEIILRSESDDLMIKRALEAETAEIARILEQKKNTKALFNVDGEPDDEVDKFFMSNTKHGDIYIKRMYCEICSLELNLSMKDFKSHLVKEHPDPRVFDFKVLNGVAFIYFNINKDLEIPYNELRCLKCDLRFSYRFAWMKHHSKEYHYCSTCGLCFRSCKVYREHVCELQDVICCAEEDDNINKCIVCSKQFKTDHDLFDHTVNVHTVSSTELMPDVDLSTCKVCKQRYPGLKSTHFCPKAPFKYGCQNCMRPFQSLLMVYCHRKAYKKYNMPCPKCKKMLERDCEIESHTCKALDNTIMFQCLQCSQDFNDRVQAVNHLIFDHKFKTTANFDELLFRYQIATIPESQSDSQMTTLSKIDNLNIAEEINNCIVVIENAESDLQNETASSALILQQLLDCNTTYTPEPSHVYITNESEVGAPGECAIEISDEEEICEESGSAGNENSPKAEKEEDDDVMIVETETPNQVPVMDETTVNAIKDEVVDDVLKNTVADDVRKKFTNDVISEITHDLLGDKITNVMKKITVDVLKYKMADKVMNKITVDAIKRETADDVMEEITDDAMRSQSYDDVMNRITIDVVKSEAPGDMMEKMTNDAWQDETAVDVMKGTSYDDVMNQITIDKVESEAPDDVTEDRSQDDVAKNEMTQVVNDGLFITIKTEPIDEPMELDDVIIEPMAEVLVDNIKMEPPEECNDVVILHDCDDLLTACGHKTIKREVSDSDLKCKRCSVTFDSIQDIINHIQTSACNAYKCSFCSHICKTQEDHERHIIPHIRMYYNRIKIFNGNREFKAFRCIRCLKVVLDINLTEHWRAHVKRNAAGVRRTKPVDDIVLTPEVTVKSEPVDGETREESVVDKLIACLLKKRTDIKYGDRCCVVCNKLTSRVNDFKRHCIEHLLDDAYKKNGVLIQCQICREQFDNSTMYRQHLREHANLPVYQCRLCSKSFSDSSNYTKHRKVHNISVLICDLCSKKFSSKNMLVQHIERHAQTKPVQCSLCPQVFPFESNFNRHMKSCHMLTPKFHCQRCKEPFFSLKHKWNHLWSQHRIRKVMADCPYCGAGFRKMWDVKSHISREHAGMPAPPKSYYRTAPYGYRITD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -