Tbis017062.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001076.1:252014-254568[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.5 3.5e+02 2.0 7.2 1 21 221 241 221 242 0.96 2 12 0.0036 0.19 12.2 1.0 1 20 253 272 253 274 0.95 3 12 7 3.8e+02 1.9 0.4 6 14 300 308 298 312 0.86 4 12 0.00034 0.019 15.4 4.9 1 23 329 351 329 351 0.97 5 12 0.00018 0.0096 16.3 3.2 1 23 356 378 356 378 0.98 6 12 0.025 1.4 9.5 1.3 2 23 400 422 399 422 0.92 7 12 0.0015 0.08 13.4 0.7 1 23 426 449 426 449 0.96 8 12 0.0035 0.19 12.2 0.1 2 23 472 494 471 494 0.90 9 12 5.9 3.2e+02 2.1 4.4 3 23 546 566 544 566 0.92 10 12 0.12 6.7 7.4 1.2 1 20 572 591 572 594 0.91 11 12 0.044 2.4 8.8 2.3 1 22 600 621 600 624 0.90 12 12 0.047 2.5 8.7 0.2 2 23 653 674 652 674 0.96
Sequence Information
- Coding Sequence
- ATGGATATTCAAACTGAAGTAAAGGAAGAAATTTCTGAGGAAAATGAAGAAACAACTGAAGTAAAAGATGAAATAATTGAATCAGAAGAAACAATAAAGGAGGAGGCTCCAGATGATTCGGAGGACATGTTTGAAGTGTTACAAAATTCAAATTTAAATATTAAAATAGAGAATAATCTTGAAAACGACGAGAACATTAATGATGATCATATATCAGGGATACCAATGGATGATATTGCATTAAAATCAGAAAACGAGGAGTCTGAGTATGTCGAACAACAGGAAGATTTGGAAGTGAAAACTGAACCAGAATTAGAATCAACAGATGAAGAAATTAAAATACCCAACTTATTACACAATGAATTATTTGATGAAGATGACTATTCGGAACAAATATTACCAAATGATTATCTAGAAAATGATAACATCCGAGAGTACCAACTGAACTCAATAACAAGCGATGCCATGTCTCTGGAACAGGAGGCATACAGCTTATATCAGAGAGATCACGACATAACCAGCAGTGAATACATACAATGCATCAAATGTACTAGCATTGTCAAAAAAAGTAACTTTTTAAGACATTCCCAAGCGCACAAAGCGATACTTAAAAACGTTAAATCATTAGAGAATAATAAATCTGGAGCTAGTGGCGTTAATCATCAATGTTCTAAGTGTTGTAAAAAGTATACCTTAAAAAAAAGCATGTTGAAACATCAGAGATACTGCAAAGTCGGTGATTCTATAGCAGATGACTTCCGGTGTACAGTTTGTGGACAATTATTTACGCATAGAAGAAGTTATATAATGCACCAGGATAATTGTAAACCACAGGAGTCACCTCATAACGTTACTAATATTGAAATGAATATGGAGTCCGGAGAATATTCATGTTCGTGTGGTAAATCATTTCAGAGACGAAGCAGAATGGAAACGTGCCTTAGATCTCATAACACGTCTGAACAGTTCCATTATCAAGGCTGTCACAAGTGTACAAGTTGCGGGAAACAGTTTCAAAATAAAAACGATTTAACGACACATAGAAAATTGCATATTAGAAAAAGATATCCGTGTAAATTCTGTCCTTTAGATTTTCATACTCCGAAACAATTGTTTAAACACTTACGTAAGCATCAGAAGGTGCAGCAGATTGAGTACGAGGTTGTTTCAGCTGTCGTCAATGGCAAACAGAAGTTAAAATGCTTTATGTGCAATAAGAATTGTAATGAATTATCAGAATTAAAGTTACACGTGTTAGGAGACCATAAGCAACCTTACACATGTCCAAAATGCCAAGAGAACTTCCGTAATATCATTGATTTTGCATCTCATACTAAGAACATGCATCCTGAAATTGAAGGACAATCTGTTTTGAGTGTCATCGAGGCATTCTCAAAACTAGCTCGCTGTTGGAAATGTCAGGAATGTGGAGTCCAGTTTGATCAGCCCAAGAAGCTGGCTCTTCATCAAGTGGAACAGCACACGATGAACTCCAAGTCTGAGATGCCCGAATTCCTATGTAGGTTTTGCAGTAGGGTGTTCTTGACTGCTAAAAGATTAGCCTCGCATTGTCGTATGATTCACGAACAGCAGGATGGCAATGGTGCTGAAGTCTATATTAATCCTATACTGATGTGTATTCATTGTAGGAAAGTCTGTAAGGATGAGAATGCATTGGCTTGTCATATGAGACTGCATTCGCCTGAAAGGAAGTTTGTGTGCAAATTCTGCGACTTCCGTTTTGCTACATTCGAAAAACGAAAGGCTCATTTGCCTATACACACTGGTGATATGAAGTATGTGTGTTTTATTTGCGACTATGTGTGCACGTCTGAAAATAGATTAACAATGCATAAGCAATCCGATAAACATTTAAAGATGAAGGAGCATTTGTTGAATAATAGGTCGGTTATCAGAGAAGTTGCAAGTAGTGAAAAGAGTGCGGATGAACCTAGTGTTTGTAATGTGTGCGGGGATGAATTCTCGAATGAATTTGCAATGTTGCAACATAAGAAAATTCATCCATTCATTGAGTTCCCTCACGATCCTCAACCTTCGAAGATATTTTTTAAATGA
- Protein Sequence
- MDIQTEVKEEISEENEETTEVKDEIIESEETIKEEAPDDSEDMFEVLQNSNLNIKIENNLENDENINDDHISGIPMDDIALKSENEESEYVEQQEDLEVKTEPELESTDEEIKIPNLLHNELFDEDDYSEQILPNDYLENDNIREYQLNSITSDAMSLEQEAYSLYQRDHDITSSEYIQCIKCTSIVKKSNFLRHSQAHKAILKNVKSLENNKSGASGVNHQCSKCCKKYTLKKSMLKHQRYCKVGDSIADDFRCTVCGQLFTHRRSYIMHQDNCKPQESPHNVTNIEMNMESGEYSCSCGKSFQRRSRMETCLRSHNTSEQFHYQGCHKCTSCGKQFQNKNDLTTHRKLHIRKRYPCKFCPLDFHTPKQLFKHLRKHQKVQQIEYEVVSAVVNGKQKLKCFMCNKNCNELSELKLHVLGDHKQPYTCPKCQENFRNIIDFASHTKNMHPEIEGQSVLSVIEAFSKLARCWKCQECGVQFDQPKKLALHQVEQHTMNSKSEMPEFLCRFCSRVFLTAKRLASHCRMIHEQQDGNGAEVYINPILMCIHCRKVCKDENALACHMRLHSPERKFVCKFCDFRFATFEKRKAHLPIHTGDMKYVCFICDYVCTSENRLTMHKQSDKHLKMKEHLLNNRSVIREVASSEKSADEPSVCNVCGDEFSNEFAMLQHKKIHPFIEFPHDPQPSKIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -