Basic Information

Insect: Tineola bisselliella
Gene Symbol: ush
Assembly: GCA_028551675.1
Location: JAPWLS010001223.1:345327-348626[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.059 3.2 8.4 1.4 1 20 130 149 130 155 0.92

2 9 8.9e-05 0.0048 17.3 0.9 1 23 193 215 193 215 0.98

3 9 0.023 1.2 9.7 0.6 2 20 245 263 245 265 0.93

4 9 0.017 0.94 10.1 3.9 2 21 511 530 510 531 0.95

5 9 0.011 0.6 10.7 0.0 3 20 560 577 558 579 0.90

6 9 1.7 95 3.8 0.0 2 23 609 630 608 630 0.93

7 9 0.0087 0.47 11.0 1.3 1 23 636 658 636 658 0.99

8 9 0.3 16 6.2 1.0 1 23 698 721 698 721 0.96

9 9 0.19 10 6.8 0.7 2 20 756 774 756 776 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.059	3.2	8.4	1.4	1	20	130	149	130	155	0.92
2	9	8.9e-05	0.0048	17.3	0.9	1	23	193	215	193	215	0.98
3	9	0.023	1.2	9.7	0.6	2	20	245	263	245	265	0.93
4	9	0.017	0.94	10.1	3.9	2	21	511	530	510	531	0.95
5	9	0.011	0.6	10.7	0.0	3	20	560	577	558	579	0.90
6	9	1.7	95	3.8	0.0	2	23	609	630	608	630	0.93
7	9	0.0087	0.47	11.0	1.3	1	23	636	658	636	658	0.99
8	9	0.3	16	6.2	1.0	1	23	698	721	698	721	0.96
9	9	0.19	10	6.8	0.7	2	20	756	774	756	776	0.92

Sequence Information

Coding Sequence: ATGTTACAAACGACTATTACACTAAGCGATGTCAACAACATCAAGGTAACCGAACGTGGAGTAGGTGAGGACGAGGAATGGGGAAACGAGAACGAGACAATGGCAGCGGAACCTCTGACGCCGAGCTCTGCAGGCGAGCGACCGACCTCATCGGGAGACGCGTCTCCAGTCTCCGTCGCGTCTCCTGCGCCGCCCGTCTCTCCGCCACGGCTGAGACTGAATGCCAATTTAGCGACAGACCCCGCACTGGCGCCGCACGCCACCACTCTTAAACGAGAACAACCCTCCCCGTCCCCGCCGCCCGCACCGCCGCCGCAGCCGACTCCTCGGGACTACCTCGCCCTCACTGCCTTCACTAATCTCTTCCCAACGGCGGGTGCGCCAGGATTCGTATGCGCACCTTGTGGCATCAGATACTCTTCACTGAGCACTTTACAAGCGCATCAGGATCATTATTGTTCGCATAGACTCTCTAAACCTTCGTTCGACGCTCAAAGCGACACACCGTCCGGAGACGCGGCCGCCGATGAATCCGGCGGAGAGGCTCCCGCTAAGACGCCTCGGTCGGGCAAGCAGTATGCCTGCACCTATTGCTCGTACAGTGCAGATAAGAAAGTTAGTTTAAACAGACACATGAGAATGCACTCGACGTCGCCTTCTCCTCCGACGCAAGCGACTCCCACGCCGCAGTCTAACGGCGACGCGACCGACACGCCGCCTCCGCAAGATCGTTACTGCACGGACTGTGATATAAGGTTCAGCTCTATCAAGACATACCGCGCTCACAAAGCACATTATTGCAGCACGCGACAGGTGCTAAAGCAACAACAAGGCCGCGGCTCCTCTTGCACGTCTGGCTCGGCGCCTCCTTCCCCGGGAGCGACCCCGCCTTCTCCTGCTGCTGCCGCGCAACAACTGGTCTTGGCGTTACCCACTAATCCCATTCTCATCGTTCCATACTCTCTCCTCAGGGGAGCGAGTACCTTGCCGGGTACTACGTTACCGGATCCCGATGCACCTTGTTTTCTACTACCTAATGGCACTATGCAACCTGTCAGTCGAGCTCTAGCCGCCGTTAACTCGGAAACCAAAGAACCAGAAGTCCTCAAGTCGTCGAACAGACCTCGAGACCCATTAAGAGACACGACGGTACCTCTCGATCTCAGTGTGAGACGATCTCCGGAATCGGCGACGCTCAGAATGGATCATGACGAGCACGAAAAAGAAAATCGACTTAGATCAGCGACTCCAGAACAAATAGTATGTGCACCATCGTTACCTGCGTCCCCCACGACACCATCGCCATCACCACGTCGGTCGTCTTCTCCCACTGGAGAGACTTCTCCAAAAAGAAGGAAAAAAGATTCCCGTGGTCCCACGCCTAAGCCGCCGAGTATTCCTTCGCCACCAGATCAGAAATTCGTTTCCCAGCTAGCATCTTCCATGTTACCGCCAGCACTTGCATTGAGATTGACGACAGATCTCCCTATATCCTCGTCACCGCAAGTGTTGGTGAAGCAAGGTGTTTCCAAATGCAAAGAGTGCAACATCGTGTTCTGTAAATACGAGAATTACAGAGTTCACAAACGACACTATTGTTCGGCCGGAACTGGCGAGGAAAGGGCCAGCCCTGCACCACCGGAGGCTGGGCCGCCGCCGCAGTATCGTCAGCTTATCTGTCTCGCTTGTGGTATCAAGTTTAGTTCGCTCGATAACTTGGCCACGCATCAATCTTATTACTGTTTGAAGCGAGAGACGAGATCCCCGCGTGGCGCCAACGCAGTAGAAGCGAGGACTGCGGCTGCTGGCGGCGAGGGTGGCTGGAAATGTCCGTGCTGTGACGTGGTGTCACCAACGGCTGCGGCCGCACAGAGGCACATGGACGCACACGCGGGCGTGAAAGCGTTCCGCTGCACCATCTGCCGGTACCGCGGAAACACACTCCGGGGAATGAGGACCCACATACGCATGCATTTCCCTAAGAAACCTGCAGACCTTCAAGAAGAGAGCTACATCGCATGCGTCGTGGAAGATGAAAACCGCGAGAGTACATCCCCTGGCGCCGCCCAAGCCGGTCCAGGTGACAAAGTCCATCGCTGTAGTTCCTGTGCTTACACATCAACGTATCGCGGCAACGTGGTACGCCACGCACGTTTAGTGCACGCGATCGAAGAACCAGAAGCAGAAGAGCCAGAAGAACCCAAGCCGCCTCCGCCGGTTGACATAAAGAAGGAGCCCGACGAAGAAGAAGCTCCCACGCCTAATTACTGCAAGTCGTGCGATATATCCTTCAAATATGTCAACACATACAAAGCACATAAACAGTTTTACTGTCCAGCTGATGCTACGGCTAATAACAACGTGCCTGCTCCTCCACCTGCGGCCAGAGTCACTGACACTCCGGTGTAA
Protein Sequence: MLQTTITLSDVNNIKVTERGVGEDEEWGNENETMAAEPLTPSSAGERPTSSGDASPVSVASPAPPVSPPRLRLNANLATDPALAPHATTLKREQPSPSPPPAPPPQPTPRDYLALTAFTNLFPTAGAPGFVCAPCGIRYSSLSTLQAHQDHYCSHRLSKPSFDAQSDTPSGDAAADESGGEAPAKTPRSGKQYACTYCSYSADKKVSLNRHMRMHSTSPSPPTQATPTPQSNGDATDTPPPQDRYCTDCDIRFSSIKTYRAHKAHYCSTRQVLKQQQGRGSSCTSGSAPPSPGATPPSPAAAAQQLVLALPTNPILIVPYSLLRGASTLPGTTLPDPDAPCFLLPNGTMQPVSRALAAVNSETKEPEVLKSSNRPRDPLRDTTVPLDLSVRRSPESATLRMDHDEHEKENRLRSATPEQIVCAPSLPASPTTPSPSPRRSSSPTGETSPKRRKKDSRGPTPKPPSIPSPPDQKFVSQLASSMLPPALALRLTTDLPISSSPQVLVKQGVSKCKECNIVFCKYENYRVHKRHYCSAGTGEERASPAPPEAGPPPQYRQLICLACGIKFSSLDNLATHQSYYCLKRETRSPRGANAVEARTAAAGGEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFPKKPADLQEESYIACVVEDENRESTSPGAAQAGPGDKVHRCSSCAYTSTYRGNVVRHARLVHAIEEPEAEEPEEPKPPPPVDIKKEPDEEEAPTPNYCKSCDISFKYVNTYKAHKQFYCPADATANNNVPAPPPAARVTDTPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01452835;
90% Identity: iTF_01452835;
80% Identity: -