Tbis013308.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010000111.1:88628-91237[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.017 0.95 10.0 2.9 1 23 122 144 122 144 0.97 2 10 0.0034 0.18 12.3 1.5 1 23 149 172 149 172 0.96 3 10 7.4 4e+02 1.8 1.0 1 10 177 186 177 199 0.86 4 10 0.0004 0.022 15.2 3.0 1 23 204 226 204 226 0.98 5 10 0.00017 0.0095 16.3 1.6 2 20 232 250 231 252 0.92 6 10 0.0015 0.081 13.4 3.0 1 23 354 377 354 377 0.97 7 10 6.6e-06 0.00036 20.8 1.2 1 23 383 405 383 405 0.99 8 10 1.7e-05 0.00092 19.5 1.1 2 23 412 433 412 433 0.98 9 10 0.77 42 4.9 0.5 1 23 439 462 439 462 0.92 10 10 0.0013 0.073 13.5 1.2 1 23 467 490 467 490 0.96
Sequence Information
- Coding Sequence
- ATGGCAGAAAAAAGAACAAATAAGATAATAAACTGTATAATGGACGATCGTGATGTGTGCGGCGGTTGTCTGTGTAAAAGTGAAAACTTAGAAACATTAGATACCATTTATGTTATTGGTGATAAAACCCACACTTTGAGTGGGATTATGACATCTGTTTATGGATACATTGTTGACAATCAGTTAGCAACCCAAAGCTTATGTGGCACCTGTATAAGTACCATATTGAAAGCCTATCTCTTTATTCGAAACATAAAACGTACTAGTGGAATCTTAGAAAGAATGTTTGAACAGATCGAAGCCAAAGCAGAAAATTGTCATCATATAATTGATAAACCTCATATAGAAACAATTACTGGCTCCTATGAATGTAGTTTTTGTAGTGAAACCTTTAAGAAACATAAAGCTATCATGTCGCATGTCAAACTGCATAAAGATAATGCGTTTCGATGCAAAAACTGTTCATTAACATTTGATAAATTACAATCTTTAGTAATCCACAGAAAACAAGAGCATTTAGAAAGAATATATCATTGTAGTATTTGTAATATAATTTTCCTTAAAAATATAAAGAAAAGACACTATACAAAATATCATAATAATTCATTGTATATTTGTAATTATTGTAAAAAAATATTATATAATAAAGCTTCTTTAAAAATGCATATACATAAGCATTTTAATAATAAATTAATTTGTGATATATGTTTTAAAACGTTTAAAAATAAAGAGAATTTATTCACGCATGAATGTCTAATGAAAGAACGCAAAAAGAACAAGGCTGAAAAAGAGGAGGATTCGAAATTATGGTCTTGGGAATACAAGTGTGGTAACTGTTATGCAAATCGTATAAGAAAATACGATGAACTACCTCTAAAGCGGCATATTAATCAAATTGACAAGAGACTGAAAAAAGGAAGCACGTGCGACGTCCACGACGGCACATCGCTGAATGAAGGACTAATAACGAACCATAGAGAAACCCACAAAGACCATAGACAACGTTTCGATTGTGGGCAGTACGTAAACGCTCAAATTAAAAGTAGAATAAATAAGAATTTTCGTTGTGAAAAATGCGATTACAGTTCTAAATTTTCAGATTGCCTAGAGGCGCATGTCAACAGATATCATTTACATGAAAGACCTTATAAATGTGATATATGCGAAAAACAATTTTATGCAAGATCTACTCTGAAAGAGCATGTTAGAACACATCTGCAGCTGAAACCTGAACAATGCGACGTTTGCGGTCACAGGTTTGTCAATAAAAAGGCTTTAAAAGTCCATGTACGTCTTCACACAGGGGAAAAGCCTTACCCTTGTGATCTATGCAGCGAGAAATTCCTTTCAGCAAGCCGTAGACAAGCTCATAGAATAAGAAAGCACTTTGATCCAGCTTTCCAATGCGATATATGCTTGAAAATGTACTACACAAGGAGTGCTGTTAAAATACATAAGAGAGATTTTCATTCTGGAAAAAAGAAGATTGCTAAAGAAAAAGGACCTTTACATGATAAGAAACAGGGATAG
- Protein Sequence
- MAEKRTNKIINCIMDDRDVCGGCLCKSENLETLDTIYVIGDKTHTLSGIMTSVYGYIVDNQLATQSLCGTCISTILKAYLFIRNIKRTSGILERMFEQIEAKAENCHHIIDKPHIETITGSYECSFCSETFKKHKAIMSHVKLHKDNAFRCKNCSLTFDKLQSLVIHRKQEHLERIYHCSICNIIFLKNIKKRHYTKYHNNSLYICNYCKKILYNKASLKMHIHKHFNNKLICDICFKTFKNKENLFTHECLMKERKKNKAEKEEDSKLWSWEYKCGNCYANRIRKYDELPLKRHINQIDKRLKKGSTCDVHDGTSLNEGLITNHRETHKDHRQRFDCGQYVNAQIKSRINKNFRCEKCDYSSKFSDCLEAHVNRYHLHERPYKCDICEKQFYARSTLKEHVRTHLQLKPEQCDVCGHRFVNKKALKVHVRLHTGEKPYPCDLCSEKFLSASRRQAHRIRKHFDPAFQCDICLKMYYTRSAVKIHKRDFHSGKKKIAKEKGPLHDKKQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -