Tbis000173.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010002323.1:43826-46584[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.5 1.4e+02 3.3 0.4 2 23 37 59 36 59 0.89 2 21 0.37 20 5.9 0.4 2 22 83 103 82 105 0.88 3 21 0.17 9.4 6.9 1.0 3 23 128 148 126 148 0.96 4 21 1.8 96 3.7 1.0 3 20 154 171 152 175 0.83 5 21 0.37 20 5.9 0.9 1 21 180 200 180 201 0.95 6 21 0.87 47 4.7 0.6 1 21 208 228 208 231 0.81 7 21 0.82 44 4.8 1.0 1 23 238 261 238 261 0.89 8 21 1.4e-05 0.00075 19.8 0.4 1 23 266 288 266 288 0.96 9 21 3e-07 1.7e-05 25.0 1.0 1 23 294 316 294 316 0.98 10 21 0.68 37 5.0 1.7 1 23 388 411 388 411 0.92 11 21 0.11 5.9 7.6 2.3 1 23 435 458 435 458 0.94 12 21 2.4 1.3e+02 3.3 0.5 2 20 480 498 479 501 0.90 13 21 1.3 72 4.1 0.6 1 20 505 524 505 526 0.87 14 21 5.9 3.2e+02 2.1 0.5 1 23 564 587 564 587 0.95 15 21 0.56 31 5.3 1.7 2 23 611 633 610 633 0.96 16 21 0.00085 0.046 14.2 2.1 2 23 656 677 655 677 0.95 17 21 0.00026 0.014 15.8 0.0 1 23 681 704 681 704 0.97 18 21 0.2 11 6.7 1.0 1 23 708 731 708 731 0.96 19 21 1.8 96 3.7 0.1 1 23 736 761 736 761 0.90 20 21 0.0014 0.076 13.5 0.5 1 23 768 791 768 791 0.97 21 21 0.0041 0.22 12.0 3.9 1 23 796 819 796 819 0.94
Sequence Information
- Coding Sequence
- ATGCGTGTAACAGAACACGACGACGCCACGAAAGCGACAAAGGGAAATTGCAAAGTGATTCTGCAACACTCGACCGCATACCCGTTCAAGACGCGCGCCGGGAAGCTTGTTTGCGTCTACTGCTTGGATTGCTTTACAGAGCCGAACGATTTCCGAATACACGTCGACCAGGAGCATAAGATCTTTAACGTATCGACGGCTCTCAGCACGTATAAAAAGTTTATTAGGATCGATTGTACGAATTTGAAATGTCGTATGTGCGATGTTAAATTGACCGGTTTGGAAGAATTGACACGTCATTTTAGTTTTGAACACGATCTGCTGGATTTGAAATGCGATTTGGGTGTGATTCCTTTTCGTCTCGAGACCAATAAGTGGTTCTGCGCTATCTGCGGTCACAAGTCGCGCGGGTTCGTTCAGCTCCTTTCGCATACGAATACACATTTTTTGAAGTCAATCTGTGACGTGTGCGGGCGTAGGTTTCTCAGTGACGCCGGTCTTAGGATGCACAAGAAGTGTAGTCATGCGTCCACGCCCTACGTGTGCAGGAGATGCTTCGAAGGGTTCACGACGTACGACGAGAAGTGCGCTCACGTCCGCGGCAGTATACCCTGTCACCCGTTCGCGTGCACGCATTGCCCGGAAAGATTTTTGTTTTACGAAGCCAGGGAGCGTCACATGGTAGCGCTTCATGGTGTTCCCAAGAAGGTCTATAATTGCATAGATTGTGATAAGGTTTATGAGTCGAGGACGTTGCTCTATTTCCATTATAAAGTCAAACATTGTGATGATAGTTTCAAATGTCAGGATTGTGGTATAAATTTCGCAACGAAAGGCGACCTGTCTAggcacaaagtcagtcatacgggcgaaaggagtttcaaatgcgacgtctgtgagaaaacgttcgcgagaagtacgaatttgaaagcgcatactaaaattcacgataacgtcaaagagtttgtttgtagcgtgtgcaataaaggTGAAAGGAAGGAAACTCACTGGTATTCTCTTGTTGTAGGAACATCAAGAACGGATACGAGTCTTACAATGGGAAAAGGTTTAGAATCGGATTTGATCTTTGGACGGAGGAAAAATGCAGAAATTGTTCTAAAATATTCAACCGCGTTAGCTTTTAAGACTGTATGGTCGAATTTCTCTTGTTGTTATTGTAGTTCACAATATGAGGATATAAATGAATTGAAAAAGCATTATGCGGAGGCGCATCCGTCTCCGGACGTGAAGGATGCCTTCCTTAAGCTTTCAGATGGTTTTATTAACGTTGATATCAGTGATTTCAAATGTAAATTGTGCTTAACCAGCTTTATTAATACTGAAGCGTTTCTCATGCACCTTCATGAGTTTCATCAGATCAAACTCGAGAATCTAAGAAGCGGTGTAATGCCTTTCAGGAGAACGAACGATAAGTGGGTTTGCGTTTTCTGCGAACAGAATTTTATTAATTTCAAAGACGCGAAACGGCACACGCCTAAGCACTATCGTAATTTTACATGCAAACGGTGTAACGTATCATTTTTGACAGTGAACGCGTATGAGCACCACATAGGGAAGAAATGTAAATTTCGTAAAACCAGATTCAAGTATCAATTGCAGCATAGAACTAACGCTGAGATTATTATCCAATCGTCCACCGTTTATCCTTTTAGGATGTGGAATCATAAATTTAGTTGCGTCTTCTGCAGGGAGCTCTTCATGAAACCGGAGCCTTTCCGTCTGCACGTCGACACCAAACATGCCGACAACGTGAACGTTTTCTACAAATGCTTAGGGAAAGAGTTTCTCAATATCGACATAACTAACATGAAGTGTAAATTCTGTGACGATCACTTCGATACACTCGAGTCTATTGCGGTGCATTTGAAGAAGTTCCATAACAAAGCTATAGATCTGTCCGCGCAAATGGGTGTTTTGCCGTTCAAATTGAACCCAGCCTTGTGGAGTTGCCTTTATTGCTCCCAATCGTTCACAGACTGCTCCAGTTTGGTCACTCACACCAAAGGCCACTTTTTGAATTTCGTTTGTGACACTTGCGGCGAGGGTTTCATTACGGAGCAGGCTCTTAACGCGCATAATAGAGTGCCACATGGTAATATTTATTCGTGTTACCGTTGTGCGGCCAATTTCTCTTCGGTTGATGATAGAAAGAACCACATGAAGGAGAAACACACCAAACACCCGTATGTGTGTTACATGTGCGATGACGTGCCCAGGTTCGCGACGTGGGACGCGAAACAGAAACACCAGCTGGATGTGCATAAAGTGCAGCCGAACCAGTACGCGTGTCAGGAGTGCACCGAGGTCTTCACGAGCAGGGCAGCTAAATACAAGCATATTAACAAAATGCATGCGACTAAAGAATTCTGTTGTAAAGAATGCAATAGGCGTTTTACTACTAAACTTCTTTTAGATAATCATGTGGCTAAGAAACATTCTGCGGGTTGA
- Protein Sequence
- MRVTEHDDATKATKGNCKVILQHSTAYPFKTRAGKLVCVYCLDCFTEPNDFRIHVDQEHKIFNVSTALSTYKKFIRIDCTNLKCRMCDVKLTGLEELTRHFSFEHDLLDLKCDLGVIPFRLETNKWFCAICGHKSRGFVQLLSHTNTHFLKSICDVCGRRFLSDAGLRMHKKCSHASTPYVCRRCFEGFTTYDEKCAHVRGSIPCHPFACTHCPERFLFYEARERHMVALHGVPKKVYNCIDCDKVYESRTLLYFHYKVKHCDDSFKCQDCGINFATKGDLSRHKVSHTGERSFKCDVCEKTFARSTNLKAHTKIHDNVKEFVCSVCNKGERKETHWYSLVVGTSRTDTSLTMGKGLESDLIFGRRKNAEIVLKYSTALAFKTVWSNFSCCYCSSQYEDINELKKHYAEAHPSPDVKDAFLKLSDGFINVDISDFKCKLCLTSFINTEAFLMHLHEFHQIKLENLRSGVMPFRRTNDKWVCVFCEQNFINFKDAKRHTPKHYRNFTCKRCNVSFLTVNAYEHHIGKKCKFRKTRFKYQLQHRTNAEIIIQSSTVYPFRMWNHKFSCVFCRELFMKPEPFRLHVDTKHADNVNVFYKCLGKEFLNIDITNMKCKFCDDHFDTLESIAVHLKKFHNKAIDLSAQMGVLPFKLNPALWSCLYCSQSFTDCSSLVTHTKGHFLNFVCDTCGEGFITEQALNAHNRVPHGNIYSCYRCAANFSSVDDRKNHMKEKHTKHPYVCYMCDDVPRFATWDAKQKHQLDVHKVQPNQYACQECTEVFTSRAAKYKHINKMHATKEFCCKECNRRFTTKLLLDNHVAKKHSAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -