Tbis000175.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010002323.1:49073-61652[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.89 48 4.7 0.1 3 23 260 281 259 281 0.86 2 16 0.23 12 6.5 2.5 2 23 307 329 306 329 0.95 3 16 0.0018 0.096 13.2 2.2 2 23 351 372 350 372 0.95 4 16 3.9e-05 0.0021 18.4 0.2 1 23 376 399 376 399 0.96 5 16 0.13 7 7.3 2.3 3 21 407 425 406 426 0.93 6 16 0.001 0.056 13.9 0.0 1 23 433 456 433 456 0.96 7 16 0.22 12 6.6 0.4 1 23 463 486 463 486 0.92 8 16 2.9 1.6e+02 3.0 0.1 1 21 491 511 491 512 0.90 9 16 0.065 3.5 8.2 0.1 2 23 543 565 542 565 0.92 10 16 0.0077 0.42 11.2 1.3 2 23 589 611 588 611 0.95 11 16 0.73 40 4.9 1.5 3 23 634 654 632 654 0.95 12 16 2.9e-06 0.00016 21.9 0.9 1 23 658 681 658 681 0.96 13 16 0.25 13 6.4 0.2 1 21 686 706 686 707 0.96 14 16 0.004 0.22 12.1 1.6 1 23 744 767 744 767 0.97 15 16 0.00013 0.007 16.7 1.8 1 23 772 794 772 794 0.97 16 16 0.0004 0.022 15.2 4.7 1 23 800 822 800 822 0.99
Sequence Information
- Coding Sequence
- ATGGAGAACAAAACCGAGTGGCGTCCCGGGCCCACGGTCTGTCGATGTTGTCTGGCGGAAGGGTGTTATAAGGACATTTCTACGGAATATTTTTGGATGGGGAAGCGAGAAGTTTATGCAGAAATGTTAGCAGACACTCTAGATTTAACGATCGGCTACTCGTCGTCTGCTGGTCCGTACAGCAACAGCAGGCTCATCTGCGAGCCCTGCATCACTAGACTACGAGATGCGTGCGACTTCAAGCGCCAGGTGCAGGAGTGCGAGAAGACCTTCATGCAACAACTCAATCCTGAGAACATTCCCTCCGTAGATGTTGTGGTTCAACCGTTGGAGACGACAGTCAAGGTTGAAGCTGTCAAATCTGAGGTGCCTGTCAGCGATGATGATGGACTGAGCGACGTCGATTTTGGTGTGGCCACGGCCGATGACGACGATGATGATGATGATGATGAATTAGACAATGAACCGTTAACGAAATTGGCAAGCAAGGTTCCGAAGAAAGAAAAAGATATAGTCGACCTGATCGACTTGGCTGATAATAGAAAAGCCACTGAGAAAAGAAAGTCTTCAGCCAAATCCAAAGCCAGTCCCGCCAAGAAGGCAAAGACTGCGGCCAAAGTGAACGAACCCGTCGCTTCGGCCAGCACCGCTTCAGCCTCGAAAGTCGAGAAAAAAAAGAAAGCGGGCCCGAGCGTCGATCCCGTGCGAAGAAACGCCGAACTTATATTAAAATACACGACGGCGCATCCGTTTAGAGTTAATGTCAATGCGATATTGTGCGTGTTCTGTTTAGACAAGTTCGAGGACGCGGACGCTTTCCGCCGACACATGCTCGCCGACCATCAGAAGTTCAGCATGCTGATGGCATTCGCGAAAATACAAAAGTCCGAATTAGTTAAAATCGATTATACGGATCTCAAATGCAAAGTTTGTAGGCAAGAGTTTAGCGATTTGAATAAAATAGGACATCACTTGAAAAGTAAACACAGAAAAGGGATCGATACGAGGACCCATTTAGGAGTAATGCCGTTCTTGCTCGACAAGGAGTTGTCTTGCGCCGTCTGCAAGAAGTGCTTCAGGTCGCTGCTTCTCCTGAACAAGCACACGGCGTCGCATTTCACGCCGTTCATTTGCGACGTGTGCGGGAAGAGGTACGTCACCAGGACCGGCCTGATACAGCACGTGCGGAACAACCACGCCGTTGAATGCAGATCCCTCTGCCGACACTGCAATCGGTCGTTTTCGTCCTTCGAGGCGAAGAAGTTGCACCAGAAGAGTGAGAAGGCCTGCATGCGGTACAGTTGCCCCGACTGCCCGGAGAGGTTCGTGGCGTGGGCGTCTAAAGAGAAGCACATGGTGAAAGTCCACGGCTGTCCGAAGAGCACGTATAAGTGTGTTGAGTGCGATGTTGTATACAACGATCGTTTGGCCTATTATTATCATAATAAAAGCGTGCATGCGCAGGTCAGGTATCCTTGCGTTCCGTGCGGAGTGAATTATTTTACAAAACAACGGTTGAACTCGCATTTGAATAGAGACGCCGGCTCAAGGGCTTCTCAGGAGAATTGCAAAGTAATCCTACAGAATTCCACGGCCTACCCGTTCAGGATCAAAAGTAGTGAGATTATGTGCGCGTACTGCTCGGAGCGTTATTCCGATCCCGACGATTTTCGATTCCACATGGAGCAGGAGCATTTCGAAATAAACATAGCCGATATTAAGCTCTCGCGTTGTAGTAGGACCCTGATCGATATAACCGGTCTCGAGTGCAAAGTTTGCAATACGAAAATTAGGAGTCTGGACGATTTGACCAATCATCTGCATAAGGAGCACGGTTTGTTAGACATGGAAGTGGATTGTGGCGTGCTGCCGTTCTTTCTAGAGAGGGACAGGTGGTTCTGTGTGGTGTGCGAGAAGAAGATGCGCGATTTGGTGCAGCTGTTCAACCACACACATTCGCATTACACGAAGCACATCTGTGACACGTGCGACAAGGGATTCGTCAATAAATCCGGTCTCATACGGCATCGGCGCAGCGCACATTCTGAATATCCGTTCGTTTGTTTACGATGCCTAAAAGGCTTCGACACGAATCAGGCTAAGATTAAACATATAAGGGAGAACAAGAAGTGCCACCCGTACGTGTGTATTCATTGCAAAGAACCTTTCATGCATTACGAGGCGAAACTGAAGCATTTGGTGGAGAAGCACGGCATGCCGAAGAAGGTGTACAACTGCAGCGACTGCAGCCAGACGTACGACAAGAGGACCCAGCTGTACTTGCATTATAAGGTGGAGCATACGAATGAATATCACCAATGTCCGGAGTGTGGGAATAAATATCCGACGAAGTCGTTTttgaatcagcacagggtgactcatataggggagagggattttaagtgcaaagtctgtaagaggacgtttctcagattgaagagtttgaggtcgcatcagaggaAGCACTTTCATTTGTCTGATGAGAGCGAGGAGGCTGATGAAGAGGAGGAGGAGGCGGAGGAGGAGGGGGGGAAGGGGAATTGA
- Protein Sequence
- MENKTEWRPGPTVCRCCLAEGCYKDISTEYFWMGKREVYAEMLADTLDLTIGYSSSAGPYSNSRLICEPCITRLRDACDFKRQVQECEKTFMQQLNPENIPSVDVVVQPLETTVKVEAVKSEVPVSDDDGLSDVDFGVATADDDDDDDDDELDNEPLTKLASKVPKKEKDIVDLIDLADNRKATEKRKSSAKSKASPAKKAKTAAKVNEPVASASTASASKVEKKKKAGPSVDPVRRNAELILKYTTAHPFRVNVNAILCVFCLDKFEDADAFRRHMLADHQKFSMLMAFAKIQKSELVKIDYTDLKCKVCRQEFSDLNKIGHHLKSKHRKGIDTRTHLGVMPFLLDKELSCAVCKKCFRSLLLLNKHTASHFTPFICDVCGKRYVTRTGLIQHVRNNHAVECRSLCRHCNRSFSSFEAKKLHQKSEKACMRYSCPDCPERFVAWASKEKHMVKVHGCPKSTYKCVECDVVYNDRLAYYYHNKSVHAQVRYPCVPCGVNYFTKQRLNSHLNRDAGSRASQENCKVILQNSTAYPFRIKSSEIMCAYCSERYSDPDDFRFHMEQEHFEINIADIKLSRCSRTLIDITGLECKVCNTKIRSLDDLTNHLHKEHGLLDMEVDCGVLPFFLERDRWFCVVCEKKMRDLVQLFNHTHSHYTKHICDTCDKGFVNKSGLIRHRRSAHSEYPFVCLRCLKGFDTNQAKIKHIRENKKCHPYVCIHCKEPFMHYEAKLKHLVEKHGMPKKVYNCSDCSQTYDKRTQLYLHYKVEHTNEYHQCPECGNKYPTKSFLNQHRVTHIGERDFKCKVCKRTFLRLKSLRSHQRKHFHLSDESEEADEEEEEAEEEGGKGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -