Tbis012261.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001636.1:31744-36978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00099 0.053 14.0 3.0 1 23 261 283 261 283 0.98 2 12 0.0086 0.47 11.0 1.8 1 23 289 312 289 312 0.93 3 12 2.3 1.2e+02 3.4 3.0 1 23 316 338 316 338 0.97 4 12 4.6e-05 0.0025 18.2 1.0 1 23 343 366 343 366 0.97 5 12 0.003 0.16 12.4 0.2 2 23 371 393 370 393 0.94 6 12 0.0061 0.33 11.5 0.3 2 20 404 422 404 424 0.95 7 12 0.00014 0.0077 16.6 2.5 3 23 434 455 434 455 0.97 8 12 0.055 3 8.5 3.0 3 23 464 485 462 485 0.93 9 12 3.4e-06 0.00019 21.7 0.5 2 23 502 523 501 523 0.98 10 12 1.7e-06 9e-05 22.7 1.9 1 23 529 551 529 551 0.98 11 12 0.00098 0.053 14.0 1.6 1 23 559 582 559 582 0.96 12 12 0.024 1.3 9.6 4.3 1 23 588 611 588 611 0.95
Sequence Information
- Coding Sequence
- ATGGGGAAATTATTAGATTTAGACCTTTACTCGGCTTGTAGGATATGTTTAACGACTGATAAAAAATTGGTGGATATAAAAAGTATTTCCTTAGGTGAAGATGCTTATTCATTCCTTGTAGGAAAAGTGGAACATAATCCATTTCAGGCAGTTTGTGAGCAATGTGGGGGCTTGTTAAAAACATATTCATTATTTAGATACACATGCCATGAAACCAATAGGTTTTTGATTGATATGTTGGAGAGATATGAATTGATAACATATGAAATGATAAAGAAGTATAATTTAAAGGCGATAGATTATAATTCTACTGAAATTATACCTGATAGGATATTTAATTATGTTAAAGATGTTAATATAAAAAATGATATAAATGAAAAGTTTTATTTGGATGAGGAACTGATTATAGCAAAGGAGGATACTGGGGATGCAGAATCAGATGATTTTGTATTAAGTGATATTATTAATAAAAAATCAGAGAATGAAAATCCTACCATAGCTGCAAATGTTAAAATTCAAAGTGCAGAGAGCTTAGATAATGAATTTATTAATGATCATAAAGAAATGATAGTTTGTGATGTCAATGAAAAAGATGAAGAATTATGTGTTAAAGAAAACAAATGCTTAGAACAAACTGAAGTTAGTTGCACATTACAAAAGGGACCTCCATTCAAAGCCTCCGTATTTAAGGATTATTTGGATGTCATTGAGATGACAGCGGAGATGGCGCGAGAGGAATTGTTATCACGGAAAAAGTCTGGTAATTATATAAATGGAAATTTTAAATGCAATTTGTGTTATAAAGGATTTGAGAACGCAACCACTTTTAAAAATCATAAGCTGAAACATAATGCTGAACTTAATTTTAAATGTGGAATATGCCAGTTTGGTTTTTATGAACAAAAAAGTTTGGCGAAACATGTCCTTGATTGCCATAAAAGAAAATTTAACTGTTTAATATGTCCCTTTATTTGTTATTCTTCACACCGAGCTAGACTCCATATTAACATGCACAAAGGGACGAGATACAAGTGTGATATTTGTGAAGAAACATTTAAGTTCCCGAACAGTTTAGTTATGCACAGAAGAAACAAACATATAACAGGATGCGTTTGCGAATTGTGTGGTGACACCTTTGTTACACCGGTCGGCTTGAAAGCACATAAACTGATGTTACATCGACATGAAGAAAATACAAAACAAGGTCCGCAATGTTCAGTTTGTGATCTGCATTTCGTCACTGAGAAGGCATATAAGCGACATTTGGTGTTATCTTCAAAACATGCAGTTAGCAATGGATGTGACAAATGTGGAGAAACGTTTACCAGTGAAACAGACCTGTCAAAGCATCATCGCTTGAATCATGCGAGGAAGCAGCCACGTGACTATTGCACTTGTTGTAAAGTGAAATTTTCAACTCGAGCTGCATACAAGGAACACATGAAGTCAACACATCCTGTTGCACACAATGTGAATCAAGCACCAAACAACGGGTTACCAAGCCAATGCGAGATTTGTGGGAAAATTTTCACGCGTGTTTGGCTTCTGACCTATCACCAGCGCAAGCATACGGGAGAGAAGCCACACAAATGCCCGCAATGTGAGAAGGCATTCAGGACACCCTCGCAGCTGTATTTACATAAACGTGTACATGACGCAGATACCACTAATATATATGACTGCAAATTATGTAGTAGGAAATATAAACGTATGGCCGCGTTACGAAAACATGAAAAAATTTTCCATCTTGGTATACGCCCGTATAGCTGTACATGTTGTGGTAAATCATTTCCGAGCCAATGCGAAGTCCGGACGCATGTGAAGTATGTACACGAAAAAGTACCGTGGCCCAAACGAAACAGAACTAAAAGAAAATATAAAGCTTCTGATGGAGAAACTATGGAATAG
- Protein Sequence
- MGKLLDLDLYSACRICLTTDKKLVDIKSISLGEDAYSFLVGKVEHNPFQAVCEQCGGLLKTYSLFRYTCHETNRFLIDMLERYELITYEMIKKYNLKAIDYNSTEIIPDRIFNYVKDVNIKNDINEKFYLDEELIIAKEDTGDAESDDFVLSDIINKKSENENPTIAANVKIQSAESLDNEFINDHKEMIVCDVNEKDEELCVKENKCLEQTEVSCTLQKGPPFKASVFKDYLDVIEMTAEMAREELLSRKKSGNYINGNFKCNLCYKGFENATTFKNHKLKHNAELNFKCGICQFGFYEQKSLAKHVLDCHKRKFNCLICPFICYSSHRARLHINMHKGTRYKCDICEETFKFPNSLVMHRRNKHITGCVCELCGDTFVTPVGLKAHKLMLHRHEENTKQGPQCSVCDLHFVTEKAYKRHLVLSSKHAVSNGCDKCGETFTSETDLSKHHRLNHARKQPRDYCTCCKVKFSTRAAYKEHMKSTHPVAHNVNQAPNNGLPSQCEICGKIFTRVWLLTYHQRKHTGEKPHKCPQCEKAFRTPSQLYLHKRVHDADTTNIYDCKLCSRKYKRMAALRKHEKIFHLGIRPYSCTCCGKSFPSQCEVRTHVKYVHEKVPWPKRNRTKRKYKASDGETME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -