Tbis016079.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001783.1:53064-59489[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0072 0.39 11.3 0.6 1 23 52 74 52 74 0.93 2 26 0.91 49 4.6 0.1 2 23 100 122 99 122 0.93 3 26 0.028 1.5 9.4 0.1 2 23 145 166 144 166 0.96 4 26 0.0001 0.0056 17.0 0.4 1 23 170 193 170 193 0.95 5 26 0.38 21 5.8 0.5 2 23 197 219 197 219 0.92 6 26 0.94 51 4.6 0.5 2 23 226 248 221 248 0.81 7 26 1.9 1e+02 3.6 1.1 1 23 255 278 255 278 0.90 8 26 0.0021 0.11 13.0 1.9 1 23 284 307 284 307 0.95 9 26 5.9 3.2e+02 2.1 1.1 1 19 367 385 367 389 0.86 10 26 2.9 1.6e+02 3.0 0.1 9 21 393 405 391 406 0.88 11 26 0.026 1.4 9.5 1.4 2 23 415 437 414 437 0.92 12 26 0.0024 0.13 12.7 0.5 1 23 458 480 458 480 0.98 13 26 5.6e-05 0.0031 17.9 2.0 1 23 484 507 484 507 0.97 14 26 0.02 1.1 9.8 2.7 2 23 511 533 510 534 0.95 15 26 0.67 36 5.1 0.4 2 23 540 562 540 562 0.92 16 26 0.099 5.4 7.7 1.4 1 23 569 592 569 592 0.96 17 26 0.0021 0.11 13.0 4.6 3 23 600 620 598 620 0.96 18 26 0.00067 0.037 14.5 4.0 1 21 626 646 626 646 0.96 19 26 0.5 27 5.5 2.8 1 23 697 720 697 720 0.95 20 26 0.043 2.3 8.8 0.6 2 23 745 767 744 767 0.91 21 26 0.0053 0.29 11.7 1.0 2 23 790 811 789 811 0.97 22 26 0.0046 0.25 11.9 0.7 2 23 816 838 815 838 0.94 23 26 0.049 2.7 8.6 0.7 1 21 874 894 874 897 0.88 24 26 0.0094 0.51 10.9 3.8 1 23 904 927 904 927 0.96 25 26 0.0037 0.2 12.1 3.9 1 23 933 955 933 955 0.97 26 26 0.0011 0.06 13.8 1.7 1 23 961 984 961 984 0.96
Sequence Information
- Coding Sequence
- ATGCCTCAACTTCGACACGGGGAAAAAAAGGCTTCAGATGTCGAGGATCAGCTCGCTGGGAGATTAGTGAAGCATCCAAAGATATACAAAGAGAATCTGTTGAAGTTGTTATTGAACACGAACGTGTGTCTTTTCCGTCGCACTTGGACCAAATACCGTTGCTTCTATTGCGCGGAGACCTTCACGAACATGGTCGAGCTGAGAGACCACTCGTCGGGCCATCTGAAGGAAACGATCACGTGGAAGGTGCGCGTGCTGAAATTGAAGTCGCTGCTGAAAATCGACATCTCGGACATGGAGTGCAATCTGTGTCTGAAAGGAATTCCCGATTTGAGCGAGATGAAAGAGCATCTGAAGTTTGTGCATGGCTTGAAATTTGGATACACGCCCAAAGAGATTTTGGTGCCATACTTGTTGGCTGAGGAAAGTGTTCGGTGTGTTATTTGTGATAAGGAGTTTCAGGCTGTGAAAAAGTTGGTGGTTCACATGAACGAGCACTATTCGAATTACGCGTGTGATAATTGCGATAAGTCCTTTCCTACGGCGCGGAGTCTGAAAGGCCACGAGAAGAACAATCACAGGGAGAACGTGTGCAGAGTGTGTAAGGAGACGTTTCTTAATAGCACCGAGCTCTATAGCCATCGTGTCAAAGTGCACAGCTATGTCTGCAAGCGACGCTGCATGTTTTGCGAGGAGACATTCCCGAGTGTGATGGCGCTCGAGTTGCATAAGATCGATGTGCATGGTGTCGAGAAGAAGAATTTCGTTTGTAATTGTTGCGGTAAAGGGTTTTTGTTCGCGTTCCTGCTCAAAGCTCACGAAAATGCGACTCATTATAAGGAACGGAAGCACGCCTGTGATAAATGCATTATGATCTTTTATACTAAGTCCGAGTTGAATCGACATTTGAACACGACTCATGTGGACGCTAAGAATTTCCTATGCACACTCTGCGATTCCAGGTTTAAGAAACGAAAGGGAACGCAGGCGACGGGCGCGAGAGTGAGCGTGGTAGCAATAGAGAGGCACCTGAAGGAGAATACGCTGAAGCTGGTAGTTAATTCGAATTTGTGCATCTTCAGTCGCGGCAGTAGGAAGTACAAGTGCGTGATATGCAAAGCGGAGTTCCTGTACATGAAAGAGCTAAGAGCCCACTGTGCTAGTCATAAGAAGATAGAGTTCAGGTCCAAGATTCTATTACAAAGGCATATGAGTTTATTCAAAGCGGATATTTCGAATTTAGAATGCGTTTTATGCTTGAAAAAATGCACGGATTTGTACGAATTAAAAAAACATTTAAGCGGAAGTCACTCTGTTGAATTCCATCACGGTGAGCCGTTGCTAGTTCCGTTCGTTTTGTTTGACGAGTTATTCGAGTGTGTCGTCTGCGAATCGAGTTTCACTAGTTTCACAACGCTGTCTAGTCATATGAGTGTGCATTTTCGTAGTTTCGTATGCGATTATTGCGGCGCGTCCTTCTATAATCATTATACGCTGAAATCGCATGTTCAATCGTCACATTGCGAGCAGAGATGCAGAATATGTAAGTTAGAGTTTAGCTCTTCGAGTGCTAAAGAGAAACACAGGCAGTCGGTGCATCATGTTAAAGTTAGGCGCTACTGTCCGTTCTGTAAAGACAGTTTTAGAAGTGCATACAAAAAACTGTTGCATATGATCGAGGCGCATGGCGTGGAGAGACCGCAGCATCGATGCAACGTGTGCGCTAAGACGTTTCTAATGAAGGGATTGTTGTCGTCGCATGTCAAGTCGATGCATCAGCGTTTGAAGCCGAAGTGCTGCCATTTGTGTCCGATGCGGTTTTACAGGGCGACGGATCTCCGGAGGCATGAGTTGACGCACAGCAGTGATAAGTCGTTCTCGTGTTGTCATTGTGGGAGCGCGTTCAAGAGCAAGGACTCGTTGAATCGACATCTCAAGTGTAAAGATCGGTATAACATAACGGAAAACCGCCAAAAAGACTGGACTAAAATTATCGAGAGGCGAGGCAACGGCCCAATATTGAGAGAGAATTCGCTAAAACTATTAGCGAACTCGACTATCTGCGTTTTCCAATGGAACAAAAGCCGCTACAGATGTTTCTGCTGTCAAAAACCATTTGGTGACGTCACTACTTTGAAAGAACACACAAACTCGAGTCACACATTAAAAAATATTGAAAAAATTATAATATTACAACAAAATAAACTGGTTAAAGTCGAAGTTTCTTCAATAATGTGCAAATTATGCTCAAAACATATTGAAAGCTTATCACAATTAAAATCACATCTCATTGACGTCCACAATTTTGAATTTGGAATTTCGAACGACGATCTCTTAGTTCCTTTTAAATTAGAAACGGATATATTGGAATGTCAGTTATGTTTTGAAACGTTCCGTCTCTTTCGTTTGCTCAATATTCACATGAATAAGCACTACCAAAAGCAAGTCTGTCATATTTGTGGCGCGGGATTTTCGAATTTGGTATTTCTAAATCTTCATAAATCAAGGTCGCACAGACCTCATTATTGTAAAGCGTGTGGCGTAGAGTTTGCTAGTAGGTTGGAAAAGCGGGACCATGACGTGGCTGTCCACGACCTCAAAATTGTGCGTAAATTGCGTTTCCCGTGTCCCTATTGTGAGGAGAGGTTTTTTCATGAGAATAACCGCGTCGCTCACTTGGTCGATAAACACGGGATGACTCGGCCCGAACATAGATGTTCTATTTGTGATAAAATCTATATAACTAAAAGCTTGTGCAATACACACATCAAAAACGTTCATATGAAGGAGAAAAATCATCAATGCAGTCTTTGTAATATGAAGTTTTACACCAAGTCTGATGTCAGCAGGCATAAGGTGACCCACACTGGGGAGAAGAACTTCGCTTGCACGTTCTGTAATAATTTGTTCGCGACAAAAGATTCTTTACGACGACATGTAAAGAGGACGCATATTACATGA
- Protein Sequence
- MPQLRHGEKKASDVEDQLAGRLVKHPKIYKENLLKLLLNTNVCLFRRTWTKYRCFYCAETFTNMVELRDHSSGHLKETITWKVRVLKLKSLLKIDISDMECNLCLKGIPDLSEMKEHLKFVHGLKFGYTPKEILVPYLLAEESVRCVICDKEFQAVKKLVVHMNEHYSNYACDNCDKSFPTARSLKGHEKNNHRENVCRVCKETFLNSTELYSHRVKVHSYVCKRRCMFCEETFPSVMALELHKIDVHGVEKKNFVCNCCGKGFLFAFLLKAHENATHYKERKHACDKCIMIFYTKSELNRHLNTTHVDAKNFLCTLCDSRFKKRKGTQATGARVSVVAIERHLKENTLKLVVNSNLCIFSRGSRKYKCVICKAEFLYMKELRAHCASHKKIEFRSKILLQRHMSLFKADISNLECVLCLKKCTDLYELKKHLSGSHSVEFHHGEPLLVPFVLFDELFECVVCESSFTSFTTLSSHMSVHFRSFVCDYCGASFYNHYTLKSHVQSSHCEQRCRICKLEFSSSSAKEKHRQSVHHVKVRRYCPFCKDSFRSAYKKLLHMIEAHGVERPQHRCNVCAKTFLMKGLLSSHVKSMHQRLKPKCCHLCPMRFYRATDLRRHELTHSSDKSFSCCHCGSAFKSKDSLNRHLKCKDRYNITENRQKDWTKIIERRGNGPILRENSLKLLANSTICVFQWNKSRYRCFCCQKPFGDVTTLKEHTNSSHTLKNIEKIIILQQNKLVKVEVSSIMCKLCSKHIESLSQLKSHLIDVHNFEFGISNDDLLVPFKLETDILECQLCFETFRLFRLLNIHMNKHYQKQVCHICGAGFSNLVFLNLHKSRSHRPHYCKACGVEFASRLEKRDHDVAVHDLKIVRKLRFPCPYCEERFFHENNRVAHLVDKHGMTRPEHRCSICDKIYITKSLCNTHIKNVHMKEKNHQCSLCNMKFYTKSDVSRHKVTHTGEKNFACTFCNNLFATKDSLRRHVKRTHIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -