Tbis016882.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001253.1:94909-99074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.81 44 4.8 0.6 3 23 180 201 179 201 0.96 2 11 0.00093 0.05 14.1 0.7 1 23 259 282 259 282 0.88 3 11 0.27 15 6.3 0.1 5 23 291 309 290 309 0.93 4 11 0.011 0.57 10.7 0.5 2 23 316 337 315 337 0.96 5 11 1.4e-07 7.7e-06 26.1 1.7 1 23 345 367 345 367 0.98 6 11 4.8e-05 0.0026 18.1 0.4 1 23 376 399 376 399 0.98 7 11 2.2e-05 0.0012 19.2 0.7 1 23 405 427 405 427 0.97 8 11 6.6e-07 3.6e-05 24.0 2.1 1 23 433 455 433 455 0.98 9 11 0.00022 0.012 16.0 0.6 1 23 460 482 460 482 0.97 10 11 9.7e-06 0.00053 20.3 4.0 1 23 488 510 488 510 0.97 11 11 0.0015 0.081 13.4 1.7 2 23 517 539 516 539 0.95
Sequence Information
- Coding Sequence
- ATGGCGTTAGCCGTAAAAAAATTATGTAGATTTTGTGCTAGAAACTATTCTTTTGCAAAAGATCTTAACGAGGCAGATACTATTTTTAAGTTTATTAAGGACTTTGTACGTTTTGAGGAGGAATCAAAATTACCTATGAAAATGTGTTTGGATTGTGAAGAAAAAATTTTGTCATTCCAAATGTTTATATTAGAATGTTCACGAGCTCAAGAGACACTGAAGCAAATGATATTAGAAGAAAATACTACAACTAATACAAAAGTTGAAGAGCTTAACACTTTGGAAATTGCAGTTAAATCTGAGGTCAAGATTGAATTGGATGAGGATGAAGATATTATGGATGAGGATGCGAGTTCTGAACAGAATTATAATGATTCCATAGAAGATGTAAAATCAGGTACAACTTCACCGGTTAAAAGAAAACCTTTTGAGCGGAGAAAACTAATGCATAGGCCGGTTAGTAAAGAGGATGAAGAAAAATTGAATGAACTGTTAATGCAACCTAAACCACAATCAAAAGATTTTGTCAAATTATTATGCCACATTTGTAATGAAGAAGCTGCAACATGGAAGATATTGAAAAACCATTTTTTAACACAACATAAAATTTCACCGTATGTGTATTGTATATGTGGAGTTCCAATAACTTCAAATACTTTAATATATAGTCATGTTGCCTCTCATAAATTAGAATATAAAAGACAATGTATACGAAATGAAAGTGGACTTGAAGATGACAAATATGCAGATCTCAAAGTGGGCAATTTTGTAAGTTTTAGGTGTATACAGTGTGGAAAGAAATTCCCTAGTTGGTACAAGCTGAGAGCACATTCTGTAAGTTCACATCGTAAAACACCTGTTGTACAATGTGTGTGTGGTTACTCTATTAAATCTAAATCTGTACTTTATAAGCACATAGCAGATCATAAAAATCCAAATAAATTAAGTTGTGATAAATGTATGAAAGTAACAAAATCGGCTGAAGCATTGGAGAAACACAAATTGAAGCATATTCCTAAGGAGGAGAGAATATTTAAATGTAACGACTGTGATAAAGTCTTCAATAATAAAGAGGCATTGAAATCTCATACAAAATCTCATATACCGATTGATGAGAGAAAGGTATATGAGTGTGAAACATGTGGATTGAAATTCACAACTCGGTCTTCCGCATTATCGCATCGCCGCGTTGTTCATGAAAAAATTAAAAGTTACATTTGTGATTTATGCGGTTATTCTTGTAGCACTAATGGTGAGCTCAAACAGCACAGAGCAATACACAGCGATGATAAGCCATTCGTGTGCCAGACCTGCTCAAAACCGTTCAAAACTTACTCGAATCTCAAGACTCATATGGACACGCATGACGAGACGTCGTACGCTTGTTATATTTGCAATCGTGTACTTAATAGTCGTCGGACGCTGAGAAAGCATCTGCTGGTTCACGATGAAAAGTGTCGCCATGTATGTTCATACTGCAACAAGGCGTTTAAGCGAAGACAGACCTTGAAGGTTCACTTGTACACTCATACAGGAGATAAACCTCTTTCTTGTCAGTGGTGTGAGGAACGTTTTGCGTACGCTTCCACTCTACGCTCGCATCGCTTACGATGTCATCCTGATAAAATGACGCAGCAACCTGCAACAACCGATTATACTTATAAGAATATTTATGATGTGGATATTGTAAAGAATGAGGGCATTGTGTTGAGTTTCCCAAAACCGGACGTCGACATAGCCACTACTTTATTAAAATAA
- Protein Sequence
- MALAVKKLCRFCARNYSFAKDLNEADTIFKFIKDFVRFEEESKLPMKMCLDCEEKILSFQMFILECSRAQETLKQMILEENTTTNTKVEELNTLEIAVKSEVKIELDEDEDIMDEDASSEQNYNDSIEDVKSGTTSPVKRKPFERRKLMHRPVSKEDEEKLNELLMQPKPQSKDFVKLLCHICNEEAATWKILKNHFLTQHKISPYVYCICGVPITSNTLIYSHVASHKLEYKRQCIRNESGLEDDKYADLKVGNFVSFRCIQCGKKFPSWYKLRAHSVSSHRKTPVVQCVCGYSIKSKSVLYKHIADHKNPNKLSCDKCMKVTKSAEALEKHKLKHIPKEERIFKCNDCDKVFNNKEALKSHTKSHIPIDERKVYECETCGLKFTTRSSALSHRRVVHEKIKSYICDLCGYSCSTNGELKQHRAIHSDDKPFVCQTCSKPFKTYSNLKTHMDTHDETSYACYICNRVLNSRRTLRKHLLVHDEKCRHVCSYCNKAFKRRQTLKVHLYTHTGDKPLSCQWCEERFAYASTLRSHRLRCHPDKMTQQPATTDYTYKNIYDVDIVKNEGIVLSFPKPDVDIATTLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -