Tbis015309.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010002226.1:60115-63131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00071 0.039 14.4 2.7 1 23 98 121 98 121 0.96 2 17 0.00032 0.018 15.5 1.3 1 23 130 153 130 153 0.97 3 17 2.5e-05 0.0013 19.0 1.4 1 23 197 220 197 220 0.98 4 17 0.00096 0.052 14.0 0.5 3 23 233 254 231 254 0.95 5 17 0.00033 0.018 15.5 0.7 3 23 277 298 276 298 0.97 6 17 0.0002 0.011 16.2 0.7 1 23 307 330 307 330 0.98 7 17 0.0052 0.28 11.7 2.0 2 20 335 353 334 355 0.91 8 17 0.0037 0.2 12.2 2.0 2 23 359 381 359 381 0.93 9 17 0.082 4.4 7.9 1.7 3 23 389 410 388 410 0.94 10 17 8e-05 0.0044 17.4 1.2 1 23 415 438 415 438 0.98 11 17 0.00016 0.0086 16.5 0.5 2 23 448 470 448 470 0.95 12 17 1.1 57 4.4 3.8 1 19 478 496 478 501 0.95 13 17 0.098 5.3 7.7 0.5 2 23 525 545 525 545 0.97 14 17 0.00026 0.014 15.8 3.3 2 23 549 570 548 570 0.97 15 17 1.8 97 3.7 1.0 2 23 577 600 576 600 0.94 16 17 0.00098 0.053 14.0 0.4 1 23 634 656 634 656 0.98 17 17 0.015 0.81 10.3 3.8 1 23 662 685 662 685 0.97
Sequence Information
- Coding Sequence
- ATGGCAGAAAATCGAAGAAAAGATCCGACGTTACAATTACCTGAAGAGCCGATGTCTTATGAAATTAAAAGAAAGAAGAAGAAGAAGAAAGACCCGCTGGCCGATGATGACTTTGTTCCGAGTGTGGAAATAACATTTGAGCCCGCAAAGAGTGTTAAAGTGGAAAATATTGAGGTCAAAGTTGAAATTCAACAGCTATTAGATAATGAGATAATCATGGATGGAGATAATAAGGAGCGGAAATTTTCAACAGAATCCGTTGACGAAACGACTCCGATACTACTTTCATCTCACGTTTGCGACATTTGCAATTCGGTTTTCAGCAGCAACCAGACGTTGCGGTCTCATAAGAACCGTAAACACAACATTTCTGATGAAGGCCTCAAGTTTAGATGCTCCAGTTGTCCGAGAGCTTTCTCTGTGAAGGCTAGTTTGAAAATGCATTTTAAGAGAATGCATTGTGGTAAAAAGAAACCTAAAGATACAGAATTGAGAGTCTGCGAGATCTGTTCGGCTACTCTTCTCGGAAAAGACAGGTTGAAGCAACACAAGATACGACAGCACGGTATTCAATATGTGGATTGCAAGCACAAATGTCCATACTGTGATATGGCTTATGAAAATTACAAGAGCCTCCTAGCTCACATCAGACGTAAGCATTTAGAGAAGGAAGATCGACCAGCTCAAGTGATAAACTGCCCTTTCTGTACTAAAATCTTTAATGTCAGAACTTCGCTTATGGTTCATGTTAAAAGGAATCACAGTCAGAATGAGGTCAGAGAGTCGAACGAATTGGCGGATTATGTCAAAGAGAACGGAGATGCCATCTGTCCATTTTGTAAGATTAGTTTTGTCAGTGTTAGGTATTTAAAAACTCATATGCAAAGGAATCACGATTCTTACAAGGAGGAATTTAATTATAAATGCAAAATTTGCGCTTTGACGTATGATAATATAGCTAGTTTGAAAACACACATTAGAAGAAAACACGATAAGAGATGTTATTGCAAAATATGCGATAAACGATTTGATAATTATGAATTGTATACACAGCACTTTGAGATGAGCGACCCCGTGTGCAAGGAATGCGGTCTAGTGTGCACCAATCACACGAATTTGGCCGAGCACAAAGATTCGGAGCACGCGAACGAAATGAAAGTGTTTTGTCACGAATGCGGTGACAAGTTTAAAAACATGAATCGTCTCAAGTTGCACATAATTCAGGTGCATGAGAAGAAAACGTTTCGTTGCGACAAATGCGATAAAGTAATGAATACTAACGATGGTTTACGGAATCATATTAAGAAGAAACACTTTGGGGAGCTGTGTATGAAGGAGCGCTCGTGTCCCTATTGTGATGAGAAATTCAATAATGAAGTGTTGTTGTGTAATCATATAGATTCTGCGCACATGGTCATGGAGGGTAGTTTGTTCTGTTGCAAACTATGTGTAGCTAAGTTTGATAGCAAACAGCAGTTGACAGTGCACTGTGATGAAGCACATTTGAGGAAAAGAAGGATTGTGAGGAATAATAAAATTAAAAAGGAAATAGTAGACAATGATGAAAAAGCTAAGTGCGATATTTGCGATACGATAGTGTTCGCGAGGAATATGTCCAAGCACATGTCGACGCATATAAATTTGAAATGTAGTCACTGCGATTATGAAACGACAACTCGGGTTGATTTCACAAAGCACATGTTGAGGCACAAAGACGCGATACCTTTAAAATGTACGGCAGATAAGTGTAGTTATTCGACGTTCAATCCGTTAGTTTTTAAGAGACATGTGAAAAATCACGAAAGTAAAAATCTTCATTGCTCCACGTGCGAGTTTAAAACGTTCAACAAGTACATACTGAGAAGTCACGAGAAGGAACACGTGATTGGTAAATTGTTGTACAGATGCGAGGAATGCGATTACAGTACCCCGATTTTGGGGAATTTGAAACAGCATAAGTTGAAACACTCGTCGGAGAAAAAGTTTAAATGTAATATTTGTACGTTTTCAACTAAATATAACTCGTCTTTGAGATTTCATATTAAGAGTAAACATGGGGATTTGTGA
- Protein Sequence
- MAENRRKDPTLQLPEEPMSYEIKRKKKKKKDPLADDDFVPSVEITFEPAKSVKVENIEVKVEIQQLLDNEIIMDGDNKERKFSTESVDETTPILLSSHVCDICNSVFSSNQTLRSHKNRKHNISDEGLKFRCSSCPRAFSVKASLKMHFKRMHCGKKKPKDTELRVCEICSATLLGKDRLKQHKIRQHGIQYVDCKHKCPYCDMAYENYKSLLAHIRRKHLEKEDRPAQVINCPFCTKIFNVRTSLMVHVKRNHSQNEVRESNELADYVKENGDAICPFCKISFVSVRYLKTHMQRNHDSYKEEFNYKCKICALTYDNIASLKTHIRRKHDKRCYCKICDKRFDNYELYTQHFEMSDPVCKECGLVCTNHTNLAEHKDSEHANEMKVFCHECGDKFKNMNRLKLHIIQVHEKKTFRCDKCDKVMNTNDGLRNHIKKKHFGELCMKERSCPYCDEKFNNEVLLCNHIDSAHMVMEGSLFCCKLCVAKFDSKQQLTVHCDEAHLRKRRIVRNNKIKKEIVDNDEKAKCDICDTIVFARNMSKHMSTHINLKCSHCDYETTTRVDFTKHMLRHKDAIPLKCTADKCSYSTFNPLVFKRHVKNHESKNLHCSTCEFKTFNKYILRSHEKEHVIGKLLYRCEECDYSTPILGNLKQHKLKHSSEKKFKCNICTFSTKYNSSLRFHIKSKHGDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -