Tbis003183.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001080.1:24941-26197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00043 0.023 15.1 2.2 1 23 54 77 54 77 0.96 2 10 0.00033 0.018 15.4 5.8 2 23 85 107 84 107 0.94 3 10 0.011 0.59 10.7 3.6 3 23 116 137 115 137 0.96 4 10 2.6e-06 0.00014 22.1 0.8 2 23 145 167 144 167 0.96 5 10 1.4e-06 7.4e-05 23.0 2.1 1 23 174 197 174 197 0.95 6 10 0.0009 0.049 14.1 3.6 1 23 203 226 203 226 0.94 7 10 8.5e-05 0.0046 17.3 1.5 2 23 234 255 233 255 0.96 8 10 0.00017 0.0091 16.4 0.9 2 23 263 285 262 285 0.95 9 10 2.2e-07 1.2e-05 25.4 1.9 1 23 291 314 291 314 0.97 10 10 1.7e-06 9.2e-05 22.7 1.7 2 23 322 343 321 343 0.97
Sequence Information
- Coding Sequence
- ATGGATTTTGGTGAAACAGACGAGGAATTAAAACAAACCACGGTGACGGAAAACTACACGAGTATGACATCGGAGAATTTAACATACGAACAGAGAGAAATGTACAAATCACTGCTGGAGACATGCAAGCCGGGCGTTTATCACAAACCGGAGAAGCAGTACATCTGCCAGCGGTGTTACAAAGAATTCAAAAATTACCAGAACTTATATCTGCACATGACTCGGGTGCATTCGTCCGAACAGGAGATGGTTGAGTGCAACGAATGCCACAAAACATTCAAAAACAAGCACTACTTGTATATGCACAAAATGAACCGGCATTACTCGGAGTCCATGCGGGCGTGCTGCCAGTACTGCCTGCAAGAATTCCGCACAAGCCGCGCCCTCACTATGCACGTGAAGAAATTCCACCCGGACACTCTCCCCGAGATAAAATGCAACGAATGCGGGAAGACTTTTGATTTGCAATACAAGCTACGAGTCCACATGGAGCGCAGACATCCCGGTGACGATGCCAAGTTCCCGTGTCCCGTTTGCAATAAAATTTTTAAATCTAAAGTTAATTTAAACCACCATCTCAAGTTTCAACACACGCCTGTGCGGAAACATACGTGTGTTTTCTGTCCGATGCAGTTTAAAGATCGCAATCATTTGAAGAGACACGTTCTGAACATCCATCCGCCATTGGAGTCCAGAGTTTCATGTCTGATATGTCTTAAGGAATTTAAAAACGAGCATTATTTGAAACAGCACATGCAGATTCATTCGGACGCCGAAACCAAGGTGACTTGTGAAATTTGCAATAAGTCATTTTTCTCTAATATGCGGCTACGGAAACATAAACTGATAGTGCATCCTGCGGGGCAGACGTTTGCTTGCCCGGAATGCGGGAAGGGATTCAAACACGCACACTATTTAAGACGTCATGTTAATACCGTCCACGTGGAACAAGAGTATGATGTTCCATGTCAACAATGCGGAAAGAAATTCAAGAGTCAAAGGTATCTGACGTATCATTTGAGAAGACACGAGCAACAACTGCTGAAACGTCTCTCGATGGTGCAAACGGTCTTTGATGATAACTCCCAGGAGTCCTCTACGAGTAGCAGCAAAAAGGCAAAAAATATTAGGAAGAAAGGGAAAAGACCGGAGCAAGAGATTGAGTTTATTAAATGTGAACCGGTGACGAGTGAATCTGATTCAGATTGA
- Protein Sequence
- MDFGETDEELKQTTVTENYTSMTSENLTYEQREMYKSLLETCKPGVYHKPEKQYICQRCYKEFKNYQNLYLHMTRVHSSEQEMVECNECHKTFKNKHYLYMHKMNRHYSESMRACCQYCLQEFRTSRALTMHVKKFHPDTLPEIKCNECGKTFDLQYKLRVHMERRHPGDDAKFPCPVCNKIFKSKVNLNHHLKFQHTPVRKHTCVFCPMQFKDRNHLKRHVLNIHPPLESRVSCLICLKEFKNEHYLKQHMQIHSDAETKVTCEICNKSFFSNMRLRKHKLIVHPAGQTFACPECGKGFKHAHYLRRHVNTVHVEQEYDVPCQQCGKKFKSQRYLTYHLRRHEQQLLKRLSMVQTVFDDNSQESSTSSSKKAKNIRKKGKRPEQEIEFIKCEPVTSESDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01451712;
- 90% Identity
- -
- 80% Identity
- -