Tbis001262.2
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001142.1:80277-84023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.32 17 6.1 0.4 1 23 100 123 100 123 0.93 2 19 1.5 79 4.0 0.2 2 23 150 172 149 172 0.91 3 19 0.017 0.94 10.1 3.8 1 23 222 244 222 244 0.93 4 19 0.34 18 6.0 1.0 3 23 279 300 277 300 0.91 5 19 5.2e-06 0.00028 21.1 1.5 1 23 305 327 305 327 0.97 6 19 1.4e-05 0.00074 19.8 0.4 1 23 333 355 333 355 0.96 7 19 6.8e-05 0.0037 17.6 3.2 1 23 361 383 361 383 0.98 8 19 5.2e-05 0.0028 18.0 0.1 1 23 389 411 389 411 0.97 9 19 9 4.9e+02 1.5 0.0 2 14 425 437 424 441 0.78 10 19 0.0033 0.18 12.3 0.3 1 23 477 500 477 500 0.97 11 19 0.022 1.2 9.7 0.8 2 23 527 549 526 549 0.94 12 19 0.026 1.4 9.5 1.1 1 22 571 592 571 594 0.89 13 19 3.9e-06 0.00021 21.5 0.7 3 23 602 623 601 623 0.96 14 19 0.56 30 5.3 6.5 1 23 628 651 628 651 0.88 15 19 0.0055 0.3 11.6 2.3 1 23 656 679 656 679 0.97 16 19 1.2e-05 0.00066 20.0 1.2 1 23 684 706 684 706 0.98 17 19 4.7e-06 0.00026 21.3 2.0 1 23 712 734 712 734 0.98 18 19 2.1e-05 0.0011 19.2 3.0 1 23 740 762 740 762 0.98 19 19 0.00058 0.031 14.7 0.2 1 23 768 790 768 790 0.98
Sequence Information
- Coding Sequence
- ATGCACATTGAGACGGTACAGACTGGGCTGTTTACTGGAAAACTTGTTTTGAAAATGACTGATCCAAAGCATTTCTGCGTTATTTGCTCGAAAAAGAGTGAACAGTTAATTTCATCTACCAGTGATACATTAAACGAGTGTCAAACAGTGTGGAAAATTCGAAAAGAAAATGATTTGTCAATGAGCGATTTGTTACTTTTCTATTTTACAGATGCGCGTGCGCAGAGCCTACTTAACCTTTACCGGGATGTGTTATTGCGGATAACGGGTAGAGCCTTCAAATGGTCTGCGAAGGGGTTCTCGTGCGCCTCCTGTGCGTCCGACTTCAAACAGTGGAATCAATTCCTCGATCATATGACGCTCGAACACGGGGACAGGGAAGAAGGCGATTGGTTCAAACTTAGGGACAACAAACCCCCTTTTCTATGTATCGACATAAATAACTCTCAATGTCGTTTGTGTGAAGAACGTGTTGTAAATTTCGACCTGTTCATACAACATTTAATCGATAGACATGAATGCGAATTCGGGCCTAATTATCGTAATCATTTTATACCGTTTATTATCAATAACAAAGAGTTTCAATGCGCCTATTGTTTGGAGATATACGATGAGTTTCATAGAGTTTACAAGCATACGGTTAAGAGTCATTTTAACGGTGTATTCCTTTGTCATCATTGCGGTGAGGGTTTCCTTTCCAAGATGCATTTGTTGCGACATCTGGAAGCTCATGATAACAAAGTTTTTCGATGCGAACAATGCAACGTTAATTATTTACATTATCATCGGTACAGACATCATTATTTGCAAGTTCATAAAGAGAGATCTGTTTGTTGTACGATGTGTGATGAGAAGTTTGTGAACACGACAGTTAGGCGTATACATGAAAGAGTCGCGCATCGCAAAGATCTGTTCAAGTGTGATGATTGTAGTAAGGAGTTCACTAGGAAGATAGCATTGACTCGACATAAAAACGAGCATTCTAAAAAGAATGTTTTCCCTtgcactgtgtgcgggaaagagttctacgtagaaagcaatttgaaaaagcactcggtcactcattccaatgtgaggccgtttaaatgcctggtctgtggaaaagcgtttcgttgtaaaagcaatttgaggattcattttcgtatccatacggatgagaggcgtttcgcttgtaatatatgcggcgaggcgttcgtgcaaggcagcagtctgcggctgcatgcgaagaaacACGATGACAGTGATCGGTCACTCGAGAGGTACAGGCGGCTCGTGTGTCCGACGTGTGGGGACGCGTTCGCGGATTATGCCAAATGGACGCGCGTCGGCGAAAACGAGGAGAGGAAAATATTGCCCGACCTGCGTTTTTATATGAAAGAGATACTGCAACGGACGAACGCGGTCCCGTTTCGGTGGTGCGGCGGCCGGTTCCGCTGTCTCTACTGCACCACCAATTATTCCGAGTGGAACGACTTGCTCGATCACGTGAGGAACGGACACGAGGATTTAAAACTACTACACGCGCTCAACCTTTACATTCAATCGTACAATTTAGTCTGTCTAGATATTCATAATTCGAAATGTAACGCCTGCGATGAAGACTTTTCCAATTTGAATTCGTTTATTGATCATTTGAAGTTCAAGCACGATTGTAAATTCGATGATTTGTATAGGGATATATTTTTGTTGTTCAAAATGTCACCGGACGGGTTTCGGTGCGGTTATTGCGATGAGGGCTTTGTGAGCTTCCACGTGCTGTACAAGCACACGGTCGAGATGCACGAGGTGACTACGAAGCTGCTTTGCGACCATTGCGGTAAAGGCTTCATTGACAAATATCAGCTGTATAAGCACATAAGGGGTGTTCACAGTCAGGCCAGTTACAAATGTAAGGAGTGCAATAAACTGTTCCAACATTATCACTTATATAGGTATCATTTCGTTTCCATTCATAAAGAGAAAACGCACAAGTGTACAGAGTGCTCGGAGTCGTTTTATGACAGCGTTCAGAGGAAATTACATGAACGCGTGACTCACAGGATAGGTCTCTTCAAATGCGGCATTTGTCAAAGAGAATACACGAGGAAAATAGAACTGACACGTCATACGAAAATTCATTTTAATCAGAAAGACTACACGTGCACCATTTGCGGTAAAGCCTTCTATGAGAAACGGCATTTGCGGGATCATTTGGTAACGCACAGTGATGATAGACCGTTCCAGTGTAGGTTTTGTAAGAAAACTTTCCCGAGGAAGCGCGCTTTGCGGACTCATGAGCGGATACATACGAACGATCGCCGGTTCACTTGCGCCGTTTGTGGCGATGCTTTCGTTCAAGGCACTAGTTTGAAGACGCATATGAAGAAACACAATAAACTGTAA
- Protein Sequence
- MHIETVQTGLFTGKLVLKMTDPKHFCVICSKKSEQLISSTSDTLNECQTVWKIRKENDLSMSDLLLFYFTDARAQSLLNLYRDVLLRITGRAFKWSAKGFSCASCASDFKQWNQFLDHMTLEHGDREEGDWFKLRDNKPPFLCIDINNSQCRLCEERVVNFDLFIQHLIDRHECEFGPNYRNHFIPFIINNKEFQCAYCLEIYDEFHRVYKHTVKSHFNGVFLCHHCGEGFLSKMHLLRHLEAHDNKVFRCEQCNVNYLHYHRYRHHYLQVHKERSVCCTMCDEKFVNTTVRRIHERVAHRKDLFKCDDCSKEFTRKIALTRHKNEHSKKNVFPCTVCGKEFYVESNLKKHSVTHSNVRPFKCLVCGKAFRCKSNLRIHFRIHTDERRFACNICGEAFVQGSSLRLHAKKHDDSDRSLERYRRLVCPTCGDAFADYAKWTRVGENEERKILPDLRFYMKEILQRTNAVPFRWCGGRFRCLYCTTNYSEWNDLLDHVRNGHEDLKLLHALNLYIQSYNLVCLDIHNSKCNACDEDFSNLNSFIDHLKFKHDCKFDDLYRDIFLLFKMSPDGFRCGYCDEGFVSFHVLYKHTVEMHEVTTKLLCDHCGKGFIDKYQLYKHIRGVHSQASYKCKECNKLFQHYHLYRYHFVSIHKEKTHKCTECSESFYDSVQRKLHERVTHRIGLFKCGICQREYTRKIELTRHTKIHFNQKDYTCTICGKAFYEKRHLRDHLVTHSDDRPFQCRFCKKTFPRKRALRTHERIHTNDRRFTCAVCGDAFVQGTSLKTHMKKHNKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -