Tbis016905.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001253.1:380634-383405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.72 39 5.0 4.8 1 21 34 56 34 58 0.68 2 23 0.045 2.4 8.8 0.1 2 23 86 108 85 108 0.96 3 23 5.4 2.9e+02 2.2 3.1 2 23 129 151 128 151 0.94 4 23 6.5e-05 0.0035 17.7 0.3 3 23 158 179 157 179 0.93 5 23 0.66 36 5.1 0.5 1 23 184 207 184 207 0.90 6 23 2.6 1.4e+02 3.2 1.5 3 23 211 232 209 232 0.92 7 23 0.0014 0.078 13.5 1.0 1 20 236 255 236 257 0.94 8 23 0.0038 0.21 12.1 1.4 1 23 309 332 309 332 0.96 9 23 0.042 2.3 8.9 0.0 2 23 358 380 357 380 0.94 10 23 0.018 0.98 10.0 0.6 3 23 404 425 403 425 0.96 11 23 0.00017 0.009 16.4 1.8 1 23 430 453 430 453 0.97 12 23 0.014 0.77 10.3 0.2 2 23 458 480 457 480 0.94 13 23 0.02 1.1 9.9 0.5 2 23 486 508 485 508 0.90 14 23 9.7e-06 0.00053 20.3 1.7 1 23 512 535 512 535 0.96 15 23 0.0001 0.0056 17.0 2.0 1 23 624 647 624 647 0.97 16 23 4.3 2.4e+02 2.5 0.3 2 23 675 697 674 697 0.93 17 23 0.011 0.59 10.7 0.6 3 23 721 742 719 742 0.92 18 23 7.3e-05 0.0039 17.5 1.6 1 23 747 770 747 770 0.94 19 23 0.0039 0.21 12.1 1.1 1 23 775 798 775 798 0.96 20 23 0.002 0.11 13.0 2.4 2 23 804 826 803 826 0.92 21 23 2.8e-05 0.0015 18.8 6.6 1 23 830 853 830 853 0.97 22 23 0.00097 0.053 14.0 0.4 2 23 860 881 859 881 0.97 23 23 0.0044 0.24 11.9 0.7 1 23 887 909 887 909 0.90
Sequence Information
- Coding Sequence
- ATGGAAACGCTATGGGATTCACTCGCTGTTAAAAGGAGGCACAATCTTCAAATCATATTCAACTTCACTTCGATTATACCGTTCAAATGGGCCGCCAAATACATGTGCTTCTATTGCGATAAGTCGTTCAATGAGGCCGACCGGTTGGCTCTCAGGAAACACACCAAATATCATGGGGAGTGTTTCCCCGACAATTATGCTATTAAACAATTGGTCGATTCTAATAAGAGCGTCAAAGTGGACGTCTCGCAGATCACGTGCGAGCTTTGTAGTACTAACTTTGAACGGTTGGACGAGATATTGGTACATGTGAATACGACACACGATCTCGAGTATGTGGCCAATGTTAATATCAATCTGGAGCCGTATTCGCTGAACGATCTGAAATGCCTTATGTGTTATAAGAATAACAATTCGTTCTCGCAGCTCGAGGTACATTTGAAGCAGTGCCACCCGATGGAGTTCGCTATTTGCTCCACGTGCGGTCAGAGGTTCAATTCGTCTAGTAATCTGGAGGTCCACGTTGAGAATTATCATACGTCCGGTTGTTATGTGTGCGAGTCGTGCCCTCAGACATTTCTCTCTCACGAGGGCCTCGAGTACCACAAGGAGCTGCTCCACGACACTATATGCGAGATTTGCCTCCATCCATTCCCTACTGTTAAATTGAAACAGAGACATATTCATGCCAAACACGTTACTAAGTTTAAGTGTTTCGCTTGTTCTAAGACGTTCGAGACTAAAGGTTCTTTGCGACAGCATACTGCTAAATGTTTCACGTTAAAAGGCACTGATATTAGGATTAAAGTTCTGGAAGGGGAGCAGGAGGACATGACGAAGGATGTGGTGAAGACCATGCGGTACAATATGTACAATGTACTGAATATGTGTACGATAATACCCTTTAAGTGGTTCATGAATAGGTTCCGTTGTTTCTATTGTCAATTGGATTTTAATGACTCGCAGGAGTTGAGGGAGCACAGCATCACGAAGCACACTAGTTGCGATCTCAAAGACTTGAAGAGGTGCAAGGGGGAGCAGGGAGAGGTGAAAGTGGACACGTCATCGCTCATTTGTAAAGAGTGTTCCGCCGTCTTTGACAATCTGGACGTGCTGATCGAGCATCTGATCTCGAATCATAAGCTCGAGTATGACAAGTCCGCCGGCACGTCCTTCCAAGAGTTCAAGCTCCACCCGAAAGAAATGCTGTGTCCGTTCTGTAATGAGAAATTTTCGTTCTTCGGTAATATTCTTAAACATATAAACGAGAAGCATTTTGAGAAGAATTTCGTATGCACCTATTGTGGTCTTTTCTTCTGTAAGGAGGTCAATCTTAGAGGGCATATTAATAGCCAACATAACGTCGGGCTTCAGTGCACAATGTGTCCGGTCAAGTTGCAGAATAAGAGCAAGCTAATTATCCATATGGCTAACAATCATGGCGAGAAGATATCTAAATGCACCATGTGCTCGGAGAGTTTCACAAGCCCCTATGTTAGAGCCAAGCATATGGTGGAAAAGCACAATTTAGAATATAAATGTAAATATTGCACTAAAGTGTATCCGAAGAACTCGTTCCTTCAGAAGCATATTAAGGCTGTACATCCAGATAAGATGGATGACTATGCTATACCATCGACATCATCCATGCTTGATGTGAAGCCTGTGAAGGAGGAGCCTAAAACTGAAGATGATTTTGACCTCGATTTGCTGTCTGTGCTCGATTGTGTTACTGAAGGCCAAGAAGTGCAGCCAGACGAAACACCTTACGTTAGGAAATCGAATGGAGAAATGAGTCGAAGGAAACGTAACCTCCAGCTGGTGTTGAACATGTCGACCGTGCTGCCTTTCAAATGGTTTTTGAGCAGCTTTCGTTGCTTCTACTGCAAACGCAACTTCTCCGATCCAGAGTTATTGAAAGAGCACACTTTGAAAACTCATTTTGAATATTTTGAGTTAAAGAAAGCGCTGAAACGTTATAAAGGTGAGAATGTTACTGTTAAGGTTGATGTTTCGTCGCTTTCGTGTCGCATTTGTTCGTCTCACTTCGACGATATTAATGTTTTGATTGACCACTTGATTATGTCGCACGATGCCGACTACGACAAGTCGTTGACAGATTGCTTCATGCCATTCCGTCTCATGGAAGACAACATGATCTGCTTAGTGTGTGGTGAAAAGTTCACATTCTTTGGTCACCTCCTAATCCATTACAACGATCAGCATTTATCGAAAGACCACATTTGCAGCTATTGTGGTCTCACCTTCTCCAAGTTCGTCAACCTGCGCGCGCACATCTCCAACCGCCACAGCGAGGATACGCACACCTGCGCTGAGTGCAATTCTGAGTTTCCATCGAAGTCCCGTCTCCTGACCCACATGGCTCGTAATCATGGCACTAAGGTCTCCAAGTGCAGGCATTGCGATGAGAGCTTCACCACACCCTATTTGAGGTCTAAGCATATGGTTGAAAAGCACAATTTGGAGCACAGATGTCCTCATTGTCACAAGGTGTTCCCGAAGAATTCCACCATGAAGACCCATATCCGTCGAGTGCATCTGAGAGAGAGGAATGTACAATGCGACGTCTGTAGTGAAAAATTCTTTGATAACACGCTTTTACGGTTACATATGGTCAAACACGAGGGGGTTAGGAATTTTAAATGTGATTATTGTGGAAAGACCTTCCTTTGGATGAAGAATCTTAGGGCTCATGTGAAGGCGCACACCAAGGACTTGGTCGCGCATAACATGTCCATGGCTATGTGTTAG
- Protein Sequence
- METLWDSLAVKRRHNLQIIFNFTSIIPFKWAAKYMCFYCDKSFNEADRLALRKHTKYHGECFPDNYAIKQLVDSNKSVKVDVSQITCELCSTNFERLDEILVHVNTTHDLEYVANVNINLEPYSLNDLKCLMCYKNNNSFSQLEVHLKQCHPMEFAICSTCGQRFNSSSNLEVHVENYHTSGCYVCESCPQTFLSHEGLEYHKELLHDTICEICLHPFPTVKLKQRHIHAKHVTKFKCFACSKTFETKGSLRQHTAKCFTLKGTDIRIKVLEGEQEDMTKDVVKTMRYNMYNVLNMCTIIPFKWFMNRFRCFYCQLDFNDSQELREHSITKHTSCDLKDLKRCKGEQGEVKVDTSSLICKECSAVFDNLDVLIEHLISNHKLEYDKSAGTSFQEFKLHPKEMLCPFCNEKFSFFGNILKHINEKHFEKNFVCTYCGLFFCKEVNLRGHINSQHNVGLQCTMCPVKLQNKSKLIIHMANNHGEKISKCTMCSESFTSPYVRAKHMVEKHNLEYKCKYCTKVYPKNSFLQKHIKAVHPDKMDDYAIPSTSSMLDVKPVKEEPKTEDDFDLDLLSVLDCVTEGQEVQPDETPYVRKSNGEMSRRKRNLQLVLNMSTVLPFKWFLSSFRCFYCKRNFSDPELLKEHTLKTHFEYFELKKALKRYKGENVTVKVDVSSLSCRICSSHFDDINVLIDHLIMSHDADYDKSLTDCFMPFRLMEDNMICLVCGEKFTFFGHLLIHYNDQHLSKDHICSYCGLTFSKFVNLRAHISNRHSEDTHTCAECNSEFPSKSRLLTHMARNHGTKVSKCRHCDESFTTPYLRSKHMVEKHNLEHRCPHCHKVFPKNSTMKTHIRRVHLRERNVQCDVCSEKFFDNTLLRLHMVKHEGVRNFKCDYCGKTFLWMKNLRAHVKAHTKDLVAHNMSMAMC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -