Tbis001563.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010000879.1:26918-35026[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.017 0.91 10.1 1.4 3 23 207 228 206 228 0.92 2 23 1.6 85 3.9 1.4 4 21 568 585 566 586 0.87 3 23 0.034 1.8 9.2 0.9 1 22 594 615 594 615 0.96 4 23 2.2 1.2e+02 3.5 3.4 1 23 658 681 658 681 0.91 5 23 0.029 1.6 9.3 2.2 2 22 691 711 690 711 0.94 6 23 5.8e-05 0.0032 17.8 0.2 3 23 763 784 761 784 0.97 7 23 3.7 2e+02 2.7 6.7 1 23 790 813 790 813 0.92 8 23 0.1 5.6 7.6 0.0 1 22 839 860 839 862 0.90 9 23 0.014 0.76 10.3 3.4 1 23 867 889 867 889 0.97 10 23 0.017 0.9 10.1 0.5 1 23 895 918 895 918 0.97 11 23 0.00027 0.015 15.7 0.8 1 23 929 951 929 951 0.98 12 23 0.00013 0.0072 16.7 1.8 1 23 1001 1024 1001 1024 0.97 13 23 0.0004 0.022 15.2 1.8 1 23 1081 1104 1081 1104 0.96 14 23 0.0009 0.049 14.1 2.3 2 23 1128 1150 1127 1150 0.95 15 23 0.065 3.5 8.3 0.1 2 23 1156 1178 1155 1178 0.93 16 23 0.0094 0.51 10.9 0.2 1 21 1220 1240 1220 1241 0.95 17 23 0.00092 0.05 14.1 0.6 1 23 1250 1272 1250 1272 0.93 18 23 4.7e-05 0.0026 18.1 0.7 2 23 1356 1378 1355 1378 0.93 19 23 1.1e-06 5.9e-05 23.3 1.0 3 23 1385 1405 1384 1405 0.98 20 23 0.049 2.6 8.6 3.1 1 23 1429 1451 1429 1452 0.94 21 23 0.2 11 6.7 0.0 1 23 1471 1493 1471 1493 0.97 22 23 0.02 1.1 9.9 0.9 1 23 1499 1522 1499 1522 0.95 23 23 1.9e-06 0.00011 22.5 1.6 1 23 1530 1553 1530 1553 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTTTGAATGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTATCGCCGATTTTTCCTACCACCAGTGTGGATGAGTCGGGACCTGCCGTCCTGGCAACGAAAATCAAAGATTGTGTCTCAGTAAACATAAATGAAAATGATGAACTTCCAACGAATGTGTGCAGGAAATGTCTGGATAATGTCAATAACTGGCATACATTCAAGGAAATATGTGAAAAGGCACAAAATAAATTACTATCATTGAAAAATGATGTCAGCCTACTTGAAGAGGTGAAATTAAAGGATGAATTATGTGAAGAAACTTATGATGATGCAGTAGCAATTGATGGCTCTTATCCTGATTTTGAGCAGAATGTCACAGAGTCAAATAAATTGCAGCCCGAAGGGCCACCAATCTTGGCTTCGTTGGGACTCACACCGAGGAGTGATAAGGGTGGTGAGAGTGAGAGAGAAGATGGTGATATAAACGAGTATGATGAAGATCTACATGAGCAACAATTCGCTAAGGTGCCATCGATGCCTGAAGTTTCTATTACAGTAATGCGACCTTCTGGTGAAACACTTCACGCTCGGCAGGGCATTCAACAACTTGCTTCCAAGGATTGCCTAGTATGCGGACGTTCTTATCGCTATTCACATAATGCGCGTAGACACGAGCTCAATTCGCATAATTTTGATCGATACACTAACAAGGTCGTTCAAAAGAAGCCTAAACTTCGACCTAATCCATTTAACCCTAAAGCTAGACTAATGCCGAATTCTGGTAACAGGATGCATATGTTCCCGAAGACGATGCCTTCTAAAATGGTGCCACATAAAGTTATACCACAACCAAAACCTATACCTATAAAACCAATCCAGAACAGTTTGCCATATCCTCTAAGGATAAAAGCATTAAAGGATTTACAAATAAAGAAAAAGGAACCACAAATATTGAAAACACTTTTAACTAGCAAGCCCGAAATATTAGTTTCCGAGCCTGAAATTCTTAATTCTGAACCTGGAAGTCCGGAGACATTAATCTCTGAACCAGAAATTGCATCATTCCAAGTAGAAACAATATTGTCTGAACCTGATTGCTTTGATCATCCGATTGATGATGATGAAATGAATGGTGATGGAGAGATGCCAAAAATAAAATCATGCGGTATTCCTGATGCTGAATCGGAGACTGAAATGGAGAAAGAGTGTCAAGACGGTGATGAAAATGCTACAACAATGAAAGGGGATGATCTTAATGAAGATGTTGGGAGATCAAATGCGTCAAACAAATTGAGCGATAATGATAATAATAACGATGATAATGAAGCACCCAATGACGCGCTGAAAGAAAAAATAAAGGAAGAGGTACAACACGATGACCAAAATCAAGAGATTGATAACAGTGGAGACGATGGTGGTCAACACAAACTCCATGGTGAACAAACAAACAGTATGTATGATGGTGAATGTGATGGCGAGGAAGCTTTAGTAATCACGCCTGTTGTTGAAATTAAAGAAGAAGTAAATGCAAACGACGATGTCGACGAGAATTACGAGGATACAGGTGATGTTGGTGATATTGATGACACAGCTGCAGTGAAAGAGGAAGAGGTGGATCCTAATAAAGTGTTCATTACAAAAACACAGTACGACTTTATTTCGAAATATCGCAACATCATCGAACAAGTTAACACACAACGTTGCTTGTGTTGTAATAAAGTATATGCACGAAGGAAACAGGTCATTCAACATTTACAAAAGAATGGCTACAAAGTACCCAAACACACTTGCTACAATTGCGTTAACACTTTCAGTCATCTTGGTGCGCTGCTTAGTCACATCAGAACTAATGCCTGTACAAATCTATGGCGAGTCATTTATAATGAAAACGGCGTCACTGAAGACATGATTGCCAAACAACAAGAAAATCGTGATCCTAAATTTCTTTACAAAGATCTTTTCAATGCCAGGTCGTATGCGTGTAAAATTTGCCATTGCAAGTTCCAACTTAAACAATTCATAATTAAGCATATCTTGGAAGTTCACGAGGATGGTCAATCGATGGTCCCTCTTGTGTGTGTACATTGCCGCACGCGGTTCAAGGACAGGACATTATGGAAGAAACACACGCGTAAAGGTGAATGTATAATAGCTGTGGCATGTGACATGTGTAGTATGAAGTTTCAAACGGTCCATGAGCACAATGAACATGTGATGTCTGTACATGTTGGTGACACTTCGCAAAACTACAGTAATCAGGCCAAGAATGTGGACGACAGACCGACCGATTGCTCAATTTGTGGAAAAAGTATTTCTAACTACGCAACTTTAGTTAGACATTTAAGAACTATTCATGGTGAAGAAAAACCTCATTGTTGTCGGCATTGTGATTCTAAATTTGAGCATGCAGATGAACTTGACCAACATGTATTCAGTGAACACTCTGACAAAACTCTCAGCACGTCATCAGACTACATTGATACTTCTTTGGTTAAAGAAGAAGTAGAGGAATATCATTATTCTTGCACTGAATGTAATGCAATATTTGAAACTGTTGATGCCTGGACTGATCATCAAGTGGATGAACACAATCAGATTGCTCATCACTGTGATCAATGTGAAAAGAAATTCCTGCGACCGTCAGAGCTCGCTGAACATAAAAATACACATTTAAGAGTTAAATTTTATCCTTGCACTTTCTGTCCTGATTCATACAATACGCCTCAGAAACTGTCTGAGCATATGAAGCAATCACACCCAGGTGAATTGACAGAAAATAATGTTGAATTCTCATGTGATATTTGCGTAAGGGATTTCAAAAGTCGTCAGGCTTATTCTAATCATATGCGTATTCATGCTAAAGTGCCAACTACTAATAGAAAACCTGGAGAAACGAAAGGGTTTTCGCCACAAATTATCGGCAAACCTATCAAACAGTTCTCGCTACCTGGTGTTGGTAACGTGCCATTCTTAAAGACTAATATGACTGTTCCTAGCGCACCATACTCTTGTGACATCTGTGGCAAAGGTTTCATGCACAAAAAGAACATTTGGAAACACAAAAAGGTATTACATGCAGACATTATAGGGGAAAAGAACAACGAGAGCGAAGAGTATGTAATGCCACCACCCACTGAAGAGGATGACTTCAACTATGATGAAAATGGAATTGGTTTGTCTACACCGCAGTTCAATAGTTTTAATTTCGCTAATTTCGGCAACACACAACAAGACACAGTGCAATATACGTGCGAATTATGTTATAAGAAGTTCCCGCTCAAAAGTAGTTTGTGGAAACACAAACGAGCGAAACACGGAATCTCCTGTCCCTCCAGCTCCGAAACCCAAACATTGTCTAACGTTGGTGACGAAGGAAGAAGATCGAGTTGCACTATTTGCAAGATTACGTTTACTGATAAAAAGTCTTATTATCGACATAGAAAAAATGTTCACAAGTCAAATGTGCAGATGTGTAAAATATGTGGTAAACCATTAAATTCCACTCTTGAGTTATATGAGCATTTGAAAGCAGCACATGCTAGGGAATTGTTGGGATACAATGCTAACCAAGGAAGTAGCAAACAAGAGACTCCAAAGGAGGAAAGTGAAATGGACGGAGATTTCGAAACTAACGATCCTCCCGCCGAATATCAAGCGCATTATCCATGTGACACATGTGGGAAGCAATTTGTTGGTTTGTTAGCATTACAGAATCATCAATGCCTCAACCAATCATCACAACCTCAAACATTCGATTGTGAGATATGTCACAAAAGCTATACCTCCATTGCAGCCTTGAAATCGCATCGAGGATGGCACTTGCGGTCACCGGATGGGAAAGCTGCGGCAAACAATTCCGGCCTGTGGATGCCTCAACATAAAGTGACAAGTAAAGTAAGTAAACATGAAGTAGTGGACGCATCTCAACTAGCTCGGGTTTCGATGCCCACAAACGTTAAGAGGAAACTACCTCCAGAGGTCGAGGTCACTGTTGTTAATCCTAACAAAAAGCTGAAATCGGACGATGCCGATTATGAACCGACCTCATATGGTGGACCGGAAGATAAATATTGTAAAATTTGCGACAAAGAATTCACAAAGCGTGCGGCATTCCAGAGGCACATGGACGAAGTTCATCAACCTAATTCCGTATTTTGTCCCGTTTGTGATAAAAGTTTTACACGCAAATGGACACTCCTCGTCCACATGAAGAAGCATTACGGGGAAGAGGAAGGAGCGGGGTCGGCAGCTGGTTCTAACGCGTCCCCCACGATCGAGGAAGATGGCCACTCTTGTGACTTATGCGGTGCACAGTATCACTCTGCGAAAGCGCTGAAGGCTCATCGCGCTCGACACCACGGCGAGGAATCAGCGGAATCCGAGGAGGACGGGTCGGTCCCTCCTCCCGGTGAATTCACGTGTGCACAATGCGGGGACGGCGTGGCCAGTCCGCGTGATTTGATCGCGCATCGCACCATGCACTGTACGCCTTCCAAGTTCTTTTGCAACGTATGCAGAGTATTCTTCAGCAGCGGCAATAACCTCGCGACGCATACGCGCGCACGACATTCTGAAATAGACAAGTCTTTATACCCGTGCGCTATGTGCGACCGAATTTTCACGAACAAAAAACATCTACAACGCCACATAGAGACGTCCCACTGA
- Protein Sequence
- MSVNFECVCRLCLSSRGELSPIFPTTSVDESGPAVLATKIKDCVSVNINENDELPTNVCRKCLDNVNNWHTFKEICEKAQNKLLSLKNDVSLLEEVKLKDELCEETYDDAVAIDGSYPDFEQNVTESNKLQPEGPPILASLGLTPRSDKGGESEREDGDINEYDEDLHEQQFAKVPSMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELNSHNFDRYTNKVVQKKPKLRPNPFNPKARLMPNSGNRMHMFPKTMPSKMVPHKVIPQPKPIPIKPIQNSLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEILVSEPEILNSEPGSPETLISEPEIASFQVETILSEPDCFDHPIDDDEMNGDGEMPKIKSCGIPDAESETEMEKECQDGDENATTMKGDDLNEDVGRSNASNKLSDNDNNNDDNEAPNDALKEKIKEEVQHDDQNQEIDNSGDDGGQHKLHGEQTNSMYDGECDGEEALVITPVVEIKEEVNANDDVDENYEDTGDVGDIDDTAAVKEEEVDPNKVFITKTQYDFISKYRNIIEQVNTQRCLCCNKVYARRKQVIQHLQKNGYKVPKHTCYNCVNTFSHLGALLSHIRTNACTNLWRVIYNENGVTEDMIAKQQENRDPKFLYKDLFNARSYACKICHCKFQLKQFIIKHILEVHEDGQSMVPLVCVHCRTRFKDRTLWKKHTRKGECIIAVACDMCSMKFQTVHEHNEHVMSVHVGDTSQNYSNQAKNVDDRPTDCSICGKSISNYATLVRHLRTIHGEEKPHCCRHCDSKFEHADELDQHVFSEHSDKTLSTSSDYIDTSLVKEEVEEYHYSCTECNAIFETVDAWTDHQVDEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCTFCPDSYNTPQKLSEHMKQSHPGELTENNVEFSCDICVRDFKSRQAYSNHMRIHAKVPTTNRKPGETKGFSPQIIGKPIKQFSLPGVGNVPFLKTNMTVPSAPYSCDICGKGFMHKKNIWKHKKVLHADIIGEKNNESEEYVMPPPTEEDDFNYDENGIGLSTPQFNSFNFANFGNTQQDTVQYTCELCYKKFPLKSSLWKHKRAKHGISCPSSSETQTLSNVGDEGRRSSCTICKITFTDKKSYYRHRKNVHKSNVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKQETPKEESEMDGDFETNDPPAEYQAHYPCDTCGKQFVGLLALQNHQCLNQSSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLARVSMPTNVKRKLPPEVEVTVVNPNKKLKSDDADYEPTSYGGPEDKYCKICDKEFTKRAAFQRHMDEVHQPNSVFCPVCDKSFTRKWTLLVHMKKHYGEEEGAGSAAGSNASPTIEEDGHSCDLCGAQYHSAKALKAHRARHHGEESAESEEDGSVPPPGEFTCAQCGDGVASPRDLIAHRTMHCTPSKFFCNVCRVFFSSGNNLATHTRARHSEIDKSLYPCAMCDRIFTNKKHLQRHIETSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -