Tbis013975.2
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010002102.1:50220-55155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.00046 0.025 15.0 0.5 1 21 120 140 120 141 0.96 2 35 0.07 3.8 8.1 0.1 2 23 172 193 171 193 0.96 3 35 0.64 35 5.1 3.2 6 23 227 245 225 245 0.95 4 35 0.00022 0.012 16.1 0.3 1 20 255 274 255 276 0.96 5 35 0.0066 0.36 11.4 0.1 1 23 306 328 306 328 0.96 6 35 0.0018 0.096 13.2 1.3 1 23 333 356 333 356 0.97 7 35 0.013 0.7 10.5 2.8 1 19 360 378 360 381 0.95 8 35 0.093 5 7.8 0.6 1 21 393 413 393 414 0.92 9 35 0.00058 0.032 14.7 0.6 1 23 444 466 444 466 0.96 10 35 0.023 1.2 9.7 1.6 1 23 471 493 471 493 0.96 11 35 4.4 2.4e+02 2.5 0.7 5 21 499 515 497 516 0.92 12 35 0.0037 0.2 12.2 0.6 1 23 528 551 528 551 0.96 13 35 1.9e-05 0.001 19.4 6.3 1 23 557 579 557 579 0.98 14 35 0.00052 0.028 14.8 0.8 1 23 585 607 585 607 0.98 15 35 0.0022 0.12 12.9 1.2 1 23 613 636 613 636 0.96 16 35 0.13 7 7.3 5.2 1 23 643 667 643 667 0.94 17 35 0.026 1.4 9.5 2.1 2 21 792 811 791 812 0.93 18 35 0.16 8.9 7.0 0.1 3 23 818 838 817 838 0.95 19 35 0.33 18 6.0 0.2 2 23 844 866 844 866 0.96 20 35 0.026 1.4 9.5 0.5 3 23 872 892 870 892 0.91 21 35 0.0023 0.13 12.8 0.2 1 23 929 952 929 952 0.95 22 35 8.5e-05 0.0046 17.3 2.8 1 23 958 980 958 980 0.98 23 35 1.5 82 4.0 0.1 1 23 987 1009 987 1009 0.96 24 35 3.3 1.8e+02 2.9 0.7 1 23 1015 1038 1015 1038 0.92 25 35 0.59 32 5.2 1.8 1 20 1046 1065 1046 1066 0.95 26 35 6.3e-05 0.0034 17.7 0.7 2 21 1170 1189 1169 1190 0.93 27 35 0.006 0.33 11.5 0.3 3 23 1197 1218 1196 1218 0.96 28 35 0.012 0.67 10.5 0.6 2 23 1224 1246 1223 1246 0.94 29 35 0.0006 0.033 14.6 0.8 2 23 1253 1274 1253 1274 0.96 30 35 0.57 31 5.3 1.7 3 20 1279 1296 1278 1298 0.91 31 35 0.00086 0.047 14.2 0.4 1 23 1324 1347 1324 1347 0.94 32 35 0.00032 0.017 15.5 0.8 1 23 1353 1375 1353 1375 0.97 33 35 1.3 73 4.1 0.1 3 23 1383 1403 1381 1403 0.97 34 35 0.2 11 6.7 0.4 1 23 1409 1432 1409 1432 0.93 35 35 0.00034 0.018 15.4 1.3 2 23 1439 1461 1438 1461 0.95
Sequence Information
- Coding Sequence
- ATGGAGCGCACGCCTACACTGCCTGATGGTATCTGCAACGTTTGCGCCATCCAAGCTTTGTCCACGCTAAAGTTCCTGGACATATGCAAAGAATCTTCAAAACAATGGTCCGTGATCACTAATTACCTGTATGACTTGAAACCAATTGTTGGAAAAAAGGGCTATTATATAATTATTGATAAATCAGCTGAACCACGTTTGGTTACTGACAAATACCAAGCTGGTGATACTGAGGAAGAAGTTATTAAACGGGTAAAAACCAGGATACACCAGAAGGATTATAACACTAAACGGCTGGAAAAGCAACGCGCTCTGAGAGATAACGGCGAAATTGAGCTTAAACGTAAATGGACTCACTTTAATTGTCCAGATTGTGAAACTCATTTTGGGAGTCGAACATTGTTGAATAGACATTTAAGGGAAAGCCGGAAGCGGTCGTGTCGACGTTGTCATGCTGTGGTTGATTTTAACCAATTCAAACAGCATTCGCGGGCTCATAAAATCAAAGTCGTGTCTTGTGATGTTTGTTTTGAAGTTTTTGATAAGATAAAACAGTTGGTTGCTCATTCCAAAGTGCATGCTGGTGGACCGCATGTTTGTGATCATTGCAAACATACATTCTCAAGTATGAGAGCTTTAAAATGCCACACATTCACTCACATTACAATTAAGTGTTCTTGCGATAAGGTGTTTATAAATAAAACCTGTTATTCCAATCATAAACGGTTATTTCATCAAAAGAATAAGGAAAGAACAAAAATATACAAGTGTCCCGATTGTGACGCCAGGTTTAAAAGTATAGATGATTTCAATAAGCATTTGTTTGAGACTGGAATTGTTGTCTGTGATAAGTGCTACGATTCTATACCTCTAGTCGACTACGTGAAGCATTTAGATGGGCATACAACTAAAGAATTTGTATGCAAAGAATGCTCTGAAGTATTTGTCGATATTAAACTGTTTAATATCCACGCTAAGGCACATTATCCCGACGATTACACTTGTGTTTATTGTAAGCAACGTTTTAAAAATGAACCCGCCTTGTCTATTCATACGAATAAATTTCATCCCAACAAATATAGATGCACGAGGTGTGATAGAATTTTTATTAATAAAAAATGCTTCATAAGACATTCGGAGAAGTGTGATAGTAGGATTCGTTTAAATAAAAACGCATATACCTGTCCGATTTGCGATATAAAATTCCTCTCCTTCTATTACTTGCATTTGCATTTACAAGAATCTAATATGAGAGTATGTTGGATATGCAAGGCTACATTGAAACTGGAAGAATTAAAACCTCATCTGAAAATTCACAACGAACCAACGCATGATTGTGAAGTATGTCCCGAGTCGTATGATTCGAAATATAAACTACGAGCACATGAGAAGATCCATGCAAGCCGACCCTTCGTATGCGTGGAATGCCATCACACGTTCGGTTCATCCCAAGCATTGGCGACACATTCAGCGAAGCATCAGATCAATGTATGCGATTGCGCGAAACGCTTTGACAACAAAAAATGTTACGCGTATCATATTAAAAGTTGTAAAAAATATAAAGTCTCCACTCAAGAGGAGTTTGTTTGTGATTATTGTAAAATGACCTACAAAAATAAAGCTGCTATCTTGATGCATATTAAACTTAAGCATTTGAACGGAATGCGCCATCAATGTTCGACGTGCGGTAAAAGGTTTTCGAGCCGATCGCATTTGAAAGAACATGAAAATAAACATAATAAAGTGTATAAATTTATTTGTTCCTTATGCGGTTTAAGATTGAGTACCAAGAAAGGGTATTCTAGGCATATGCTAACCCACAGTGGGGAAAAGCCACACGTATGCCCATATTGCAAAAGCGCCTTTATAACTGCGTCACAAAAAACAAGGCATGTGATGATGAGGCACGCTCGAGATGTTGAATTTCATCAATGTACCTTGTGTCCGAGAAGGAAGTATGCTCAGAGGAAGAATTTGACGAAACACATGCATGAAAGGCATGGTGTAACTCCTGAAGACGAGAAAGATCCACTGACTGGAGGATGGTGGTTTCAGATGGCGGACGAACCTTCCCTGCCGTTCGGAGTGTGCCAACGTTGCTTCGATGATGCCATCGCCGCTGTACGATTCCGAAATTTCTGCACCGATTCAAGAAAACTCTGGAATCGAGCGATAGAATGTCTAGATGATATTCCCAAACCAGCTGAAAATGTCAAATCATATTACCTTTTTTTAGGGAATTTAGAGTCTAATAGTATACAGTTAGCAACAAATTTCCATAATGAGCCGTTGCAAGATGTTATTAGAAAAGTTAAAAGACGTGAGACTCGTATAAAGCTTAAAAATGCTGCTGAGGGATGTAAGATACCATGCCAGTGCTCTTATTGCAGTATGAAATTCTCGATGCCGTATTACTTGAGTCTGCATTTGAAGAATACGCCCAAGAATGCGTGTAATTTGTGTGGAAAAGTCATGGATAGGAAAGAGTTGAAAGCCCACCTGGCTCGGATTCATGACAAGTATATTCGCCAATGTGAACAGTGTTACGATACTTTTGACAACGACGATCTGTTGATGGATCATTTGAAATCGGAACACGCGGGCTCGCAAAATTGTAAAGTTTGCGGACATGGGTTCTTTAACGAGAGAGCTCTGAGGGCACACGCGTATGCGCACTCGTTATTCCATTGTCGGAAGTGCATGAAGAGTTTTGAGAATCGACGTTGCTTCAAGTACCATCAGAGTAAATGCAGACACGTGGCGCTCGAACAGAATTTCTCTAGCTATTCGTGTGATTATTGCGGTAACGAGTACGCGAAGAAGCCGTCTTTAAGAATTCATATAATCCAAAAACATATGCACGTATTGCCGTACTCCTGCAGCACTTGCGGAAAACGAACTTCCACTCTAGCCCATCTGAGGACGCATGAACAAACGCACGTGGAATTCAGAGAGGTGTTCGCTTGTGACGTCTGCGGGGCTCAAATGAAGTCCCAACTGGGATTTATGCTCCACAAGAGAATCCACACTGGGGAGAAACCCTACGAGTGTGGTAAATGTGGCGACAGGTTTCTGTCGGCGTCGAGGAGGCTGGACCATATGAAGCGACGCCACGGCTCCGATAAGGACATGCCGCACAAGTGTGATCAGTGCACGGCGCGCTTTTTGAGACCGTGCGAGCTGAAAAAACATGTGGCTGATGAAGAATTATGTCCCAGGGGAGTGTGTAACAAGTGCATGTCTTCAGTCCTGGCCGCTCAGGAAATAAATGCACTAGTAAAGCAATCGAGTCACCTTTGGAGGAATGCAATCACATCACTAAACGATATGCCTATCAATTATTTTGAATCAACAAAGTCTATCTGCGCGTTCATGAGAGGCGAAAACTTAGAAATGAATATTGTAGCCGACTGCTCGACAGACAACTCCAAAGGCATTCTGGAACGATTACAGGGTGGAGTTAAGAAGCCACTCAAACCACGGCCCAGGCATTTGGGGCCTTTGTGCATCTGTATGGACTGCGGAAAACGATTCACAAACCCATATCTTTTGAATGTGCACTTGAAAAATAGTGCCGTGAAAGAGGCTTGCCCGAAATGTGGAGTTGTTTGTAGACGAGGTGAGGAGCTAAAGATGCATTTGCAGAATGTACACGACGAGACGTGGCTCAAATGCAAGGATTGCACGCTGCTGTTTCCGAATCAGACGGCACTTAAAGACCATAAGGCACGCACTCATAAAACCGCAGGTGTCCGCGTTTGCGCCGAGTGCGGCCGCCACTTCACACGGAGAGCCACGTACGAAGCGCACTCACAAATGCATGCAGTCAGAATGTGTAGGGCTTGCGGGAAACAATTCGATAACCGCGCATGTTATCGCACCCACAGATCTCAATGCGAACCCAACGCTAAGCCTAGGGGACAGAATTTGACACGCAGTCAAAAAATCAACGTCCGAGACCCTTCCACGTTTATTTGCGATTACTGTATGAAGACTTACTCTTCGCGACCGCAATTGAAGAATCATATATTATGGATCCATATGGATGTGAGGCCGCATCAGTGTCAGTGGTGTGGAAAGCGTTTTTACACGTCAGCTCGCTTGGCTGAGCATACGATTGTTCATACGAGAGAGAGGAACTTTGGTTGCGACATTTGTGGTGCTAGACTGGTGTCCAAAATGGCCGCCGTTTACCATAGACGACGCCACACGGGGGAGAAGCCGTACGCATGCGAGGACTGCGGTGATACGTTCATTTCGTCTTCTAGAAGGTCAGAGCACGCTAAGAGACGGCATGGAAAAGGGTCGAGGATGCAATGTAGGCAGTGTCCGTTGAGTTTTGTTCGGAGCCATGAGCTGAGGAAGCATGTGGAGAAGGCTCATTCTTTTATTACAATGAAGGAGGTTTGA
- Protein Sequence
- MERTPTLPDGICNVCAIQALSTLKFLDICKESSKQWSVITNYLYDLKPIVGKKGYYIIIDKSAEPRLVTDKYQAGDTEEEVIKRVKTRIHQKDYNTKRLEKQRALRDNGEIELKRKWTHFNCPDCETHFGSRTLLNRHLRESRKRSCRRCHAVVDFNQFKQHSRAHKIKVVSCDVCFEVFDKIKQLVAHSKVHAGGPHVCDHCKHTFSSMRALKCHTFTHITIKCSCDKVFINKTCYSNHKRLFHQKNKERTKIYKCPDCDARFKSIDDFNKHLFETGIVVCDKCYDSIPLVDYVKHLDGHTTKEFVCKECSEVFVDIKLFNIHAKAHYPDDYTCVYCKQRFKNEPALSIHTNKFHPNKYRCTRCDRIFINKKCFIRHSEKCDSRIRLNKNAYTCPICDIKFLSFYYLHLHLQESNMRVCWICKATLKLEELKPHLKIHNEPTHDCEVCPESYDSKYKLRAHEKIHASRPFVCVECHHTFGSSQALATHSAKHQINVCDCAKRFDNKKCYAYHIKSCKKYKVSTQEEFVCDYCKMTYKNKAAILMHIKLKHLNGMRHQCSTCGKRFSSRSHLKEHENKHNKVYKFICSLCGLRLSTKKGYSRHMLTHSGEKPHVCPYCKSAFITASQKTRHVMMRHARDVEFHQCTLCPRRKYAQRKNLTKHMHERHGVTPEDEKDPLTGGWWFQMADEPSLPFGVCQRCFDDAIAAVRFRNFCTDSRKLWNRAIECLDDIPKPAENVKSYYLFLGNLESNSIQLATNFHNEPLQDVIRKVKRRETRIKLKNAAEGCKIPCQCSYCSMKFSMPYYLSLHLKNTPKNACNLCGKVMDRKELKAHLARIHDKYIRQCEQCYDTFDNDDLLMDHLKSEHAGSQNCKVCGHGFFNERALRAHAYAHSLFHCRKCMKSFENRRCFKYHQSKCRHVALEQNFSSYSCDYCGNEYAKKPSLRIHIIQKHMHVLPYSCSTCGKRTSTLAHLRTHEQTHVEFREVFACDVCGAQMKSQLGFMLHKRIHTGEKPYECGKCGDRFLSASRRLDHMKRRHGSDKDMPHKCDQCTARFLRPCELKKHVADEELCPRGVCNKCMSSVLAAQEINALVKQSSHLWRNAITSLNDMPINYFESTKSICAFMRGENLEMNIVADCSTDNSKGILERLQGGVKKPLKPRPRHLGPLCICMDCGKRFTNPYLLNVHLKNSAVKEACPKCGVVCRRGEELKMHLQNVHDETWLKCKDCTLLFPNQTALKDHKARTHKTAGVRVCAECGRHFTRRATYEAHSQMHAVRMCRACGKQFDNRACYRTHRSQCEPNAKPRGQNLTRSQKINVRDPSTFICDYCMKTYSSRPQLKNHILWIHMDVRPHQCQWCGKRFYTSARLAEHTIVHTRERNFGCDICGARLVSKMAAVYHRRRHTGEKPYACEDCGDTFISSSRRSEHAKRRHGKGSRMQCRQCPLSFVRSHELRKHVEKAHSFITMKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01451699;
- 90% Identity
- -
- 80% Identity
- -