Tbis005225.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010001111.1:11726-21214[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.8e-05 0.0026 18.1 2.7 1 23 442 464 442 464 0.97 2 14 7.6e-05 0.0041 17.5 1.3 1 20 470 489 470 492 0.94 3 14 4.1e-06 0.00022 21.5 4.5 1 23 506 528 506 528 0.98 4 14 3e-05 0.0016 18.7 4.6 1 23 534 556 534 556 0.99 5 14 3e-05 0.0016 18.7 5.3 1 23 562 584 562 584 0.97 6 14 7.3e-06 0.0004 20.7 6.7 1 23 590 612 590 612 0.98 7 14 5.8e-07 3.1e-05 24.1 2.0 1 23 618 640 618 640 0.98 8 14 1.2 64 4.3 5.2 5 23 647 665 646 665 0.94 9 14 2.1e-06 0.00011 22.4 4.3 1 23 671 693 671 693 0.98 10 14 2.5e-06 0.00014 22.1 7.1 1 23 699 721 699 721 0.98 11 14 1.4e-05 0.00074 19.8 8.0 1 23 727 749 727 749 0.97 12 14 8.2e-06 0.00044 20.5 3.3 1 22 755 776 755 776 0.96 13 14 0.00038 0.021 15.3 0.3 1 23 785 807 785 807 0.96 14 14 0.0051 0.28 11.7 5.0 1 23 816 838 816 838 0.99
Sequence Information
- Coding Sequence
- ATGAATCAGGACCATCATAATTTAAATGCGGGCGGTGGCCAGCCACCTGGGAATTCGGAGGCACAAACACAAAGGTCGGCCGTACAGCAAGGGAATGCATTGACTCCCGTGTCTACGTCAGCCACTGATTTACGAGTTAATTCGGCAGCTGTGAACGTTGCACTGTCTAGTGTTGCGAAGTATTGGGTGTTTACAAATTTGTTCCCAGGGCCAATCCCACAAGTTTCGGTCTATGGGTTACAGGCGGGGCCGCGAATTGAAAATGGGAAACCAGTTCAAGAACCTATGCAGACACATGCAAATATATTAAATGGTGATCCTAATAACTTAGTGCTTGGCCACCATACACAATCACAAGTGTCAGTCAGTGGTGCAGGACAACAAATACCTGTGACACAGATTATAGCTACACAATCTGGGCAGACACATGAGACACTGACTCACGCCGGACAGCTGACAGCGCAGACGGCGGAGCTGACTGGTCATGGATCTGGTGCCTCCAGTAATTCAGCATCTCATCATCAGGTACCCAATACTCGGGTCGAATTTGTCCAACACCATAATCTTGATATGGTAAATTATGGGGGACATCATGCGCATCCAAGTATATTGCAGCAACACCTGTTGTCAACAGCTAGGCCAGATGCAACACAACAGATTCAGCTGACGGTTAGTGAAGATGGCATTGTGACTGTGGTGGAGCCTGGCAACAAAATCGTGGAAAAGGATGAAATTCACGACATCAAAATGCCTCAAGATCACACTTTCACAGTGCACCAATTACAACAGATTGTTAATCAACAGGTAATAGATAGTGTAGTCCGTATCGAACAAGCGACTGGGGAACCTGCAAATATACTTGTAACACACAATCCTGATGGCACTACATCAATTGAAGCAAGCGCGCAAGAATCACTTCTTATTAAGGACGAAAAGAACAAAATTGAAACTGCTCAGTTTGCTATTCCTGCTGAAATCAAAGATATCAAAGACATTAAAGGCACTATTGATTTAAAGAATGTCGGTGGATTGGGCATGGAAGGCGCGGTTGTAAAGATATCAACTGCGGGAACTCAGGATCATGAGTTACATCCCATGTACAAAGTTAATGTTGAAGATTTATCACAACTACTTGCATATCATGAAATATTTGGTAAACTCGGTGCTGAAGGAGCTACAGCACAACAACCGCAACAGGCTCAGCAGTTAAAGcaacaacaaccgcagcagcaacagcagccgcagccatcacagcagatggAGATTGAAATTGAACCAGGTCCTAGTGGTGCACTCACTGACACAGATAGCACTCCTGGACATCATTCGTGCGACATCTGCGGGAAAATGTTTCAATTCCGTTATCAGCTTATTGTGCATAGACGCTATCATGGCGAAAGAAAGCCTTTTACGTGCCAAGAATGTGGACAAGCCTTCTCAAATCCTATGGAATTAACAAGACATGGGAAGTGTCATTTAAATGATAGAACAAAGAGAATAGCACAagacaagccatacgcttgcacgacatgccacaaaacattcgcgcgtaaagagcatttagaaaatcacgtccggagtcacactggagaaactccttatagatgtcagtattgcgcaaagacttttacccgtaaggagcatatggtgaatcatgtaaggaagcatacgggtgagacgccgcatcgttgtgatatttgcaaaaagagcttcacgagaaaagaacacttcatgaaccatgttatgtgGCATACAGgtgaaactcctcatcaatgtcacctatgtggaaagaagtatactagaaaggaacatttagcgaaccatatgctttctcatacgaatgacaccccatatcggtgcgacctatgcggaaaggcatttacgaggaaggaacacttcacaaaccatatATTGTGGCACACGGgtgaaactccgcatcgttgcgatttttgctcgaaaacGAAGGAACACCTCGTCACTCACGTAAGacaacatactggagagactccatacgaatgcagttactgttcgaaggcgttttcaaggaaggaacacctcaacaatcaTATACATATACATACAGGCAATAATCCACATAAATGTACATATTGTACGAAGACTTTCTCCAGGAAGGAACATCTCACCAATCATGTCAGgatacatacaggagagtcgcctcatcgttgtgaattttgtcaaaaaactttcacaagaaaggagcatttgacaaatcatatgaaacaacatactggcgaTTCGTCATTCACGTGCAAAATGTGTTCCAAGACTTTTACAAGGAAGGAACATCTCACTTCACATGTCAAGACTTATGCGTGTACAACAGAATGCCCCTTCACGTGCGGTGAGTGTGGGAAGTCATTCCCTCTCAAAGGTAATCTACTTTTCCATGAGAGGTCGCACAACAAAGCTGGGGCTAACAGGCCGTTCCGGTGTGACATTTGCTCTAAGGATTTTATTTGTAAAGGTCATCTTGTGACACACCGACGGACTCACTCCGAAGCGACAGACGCGACAACGGCTGATAGTGACCCTGTTAACACTGATGTGGATATGGAGTGCACGCCTGAATGTGCCAAACCAGACGTTAAACTACTTGATATTAAGATTGAAAATAGAAGTGTGAGTGATCCAAATATTGTACAAAACGCCCAACAACCTCAACAAAGCAATGCTGTGATGCAAATAGCCGCCGGCCAAGTTACTCAGCAGGCTGTGGTTCGGACCTCCGCCGCACCGTACAGTCACCACCAGGCCAGTCCCACTATGCCGCCCCATCCAGTCACCGTCAACTACTGA
- Protein Sequence
- MNQDHHNLNAGGGQPPGNSEAQTQRSAVQQGNALTPVSTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLQAGPRIENGKPVQEPMQTHANILNGDPNNLVLGHHTQSQVSVSGAGQQIPVTQIIATQSGQTHETLTHAGQLTAQTAELTGHGSGASSNSASHHQVPNTRVEFVQHHNLDMVNYGGHHAHPSILQQHLLSTARPDATQQIQLTVSEDGIVTVVEPGNKIVEKDEIHDIKMPQDHTFTVHQLQQIVNQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAQESLLIKDEKNKIETAQFAIPAEIKDIKDIKGTIDLKNVGGLGMEGAVVKISTAGTQDHELHPMYKVNVEDLSQLLAYHEIFGKLGAEGATAQQPQQAQQLKQQQPQQQQQPQPSQQMEIEIEPGPSGALTDTDSTPGHHSCDICGKMFQFRYQLIVHRRYHGERKPFTCQECGQAFSNPMELTRHGKCHLNDRTKRIAQDKPYACTTCHKTFARKEHLENHVRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCHLCGKKYTRKEHLANHMLSHTNDTPYRCDLCGKAFTRKEHFTNHILWHTGETPHRCDFCSKTKEHLVTHVRQHTGETPYECSYCSKAFSRKEHLNNHIHIHTGNNPHKCTYCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDSSFTCKMCSKTFTRKEHLTSHVKTYACTTECPFTCGECGKSFPLKGNLLFHERSHNKAGANRPFRCDICSKDFICKGHLVTHRRTHSEATDATTADSDPVNTDVDMECTPECAKPDVKLLDIKIENRSVSDPNIVQNAQQPQQSNAVMQIAAGQVTQQAVVRTSAAPYSHHQASPTMPPHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -