Ttri005925.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- stc
- Assembly
- GCA_905220615.1
- Location
- HG992316.1:2356874-2377476[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 2.1e+04 -4.1 1.6 15 19 318 322 317 322 0.81 2 14 0.04 4.3e+02 1.3 1.8 2 10 350 358 350 358 0.93 3 14 3.1e-05 0.34 11.2 18.1 4 19 366 381 364 381 0.93 4 14 1.2e-07 0.0012 19.0 10.3 1 18 417 434 417 435 0.94 5 14 4e-05 0.43 10.9 17.1 1 18 476 493 476 494 0.97 6 14 4.5e-06 0.048 13.9 11.9 1 19 535 557 535 557 0.90 7 14 2 2.1e+04 -5.1 2.2 6 10 587 591 587 591 0.94 8 14 0.1 1.1e+03 0.0 10.3 1 11 597 607 597 608 0.94 9 14 2 2.1e+04 -4.4 1.8 4 10 612 618 611 618 0.77 10 14 8.7e-08 0.00094 19.4 17.8 1 19 624 642 624 642 0.99 11 14 2 2.1e+04 -4.2 1.6 6 10 671 675 671 675 0.85 12 14 0.032 3.4e+02 1.6 17.2 1 18 681 697 681 698 0.81 13 14 4.2e-08 0.00045 20.4 13.2 1 16 734 749 734 759 0.84 14 14 2 2.1e+04 -5.1 18.3 1 18 765 787 765 788 0.78
Sequence Information
- Coding Sequence
- ATGTCGCAGTGGAACGGGGACGATTCATACAATTCTAGGCAGTACAGAGATGCTGACAACTGGGGTAGCAACCAGGGTGGCCAATATCGTGATCAGAGTAATTATTACCCAAACAATTACAACCAGAATGGTCAATATGTGTCATTTAACCAATTTCTAGCACAAATGCATAGTAATGGTGCTTCTAGTGGTAGTAATTATGATAGGCAGCACCAAAGTTATGGCGCCAATCATTACACAAGTGCCCCTTCCACATCACAAGTGAATCATAGCAATACGCCAAACCAGGAAGTAGGTAGTTATGGAAATAATGCAACCGCAAGCACATCACAATCATACAGTAATGACAGAGTGTTAAATTCTAAATTAACAGCAACCGCAACAGAATTTGTTCCTAAAAACATGCATTCACAATATACTCCTGAACCACCAGTGGCAGAAACAACAACATTAAATGGTTCTGAGGAGCAACAACCAAATAACTATAGAAACCGCCATCCTGAAGAAGAAAGAAAGTATGAAACCAAATTTGATAGAAATCGTAAACCTAACTTGAACAAAAATAGAGACCCGGGCAACCAGCGAACATTTTACAATAGTAATGCAAGTCAAGATGTAAGAAATAATTCAAATAGTCGTAATAAAAATTGGTTTGGTACCCCAAGGGGGAGGTCGGAGAGAAATTACAATGAGGATGAGAATTTTGCTAATAACTATCAACATAAAAGTAAACCAAGCCCTATGAGGAATAAGAAAGTGCCAGATCAAGAATTAACCCACAGAGAACGTCTGAGTGAGCAATTAGACAACGGCACATTGGAATGTTTGGTTTGTTGTGAACAATTGAAACAAATGAATGCAGTGTGGTCGTGTACAAACTGCTTTAATGTACAACATTTGAGATGTATTAGGAAATGGGCTACAAGTAGTATACAAGAAGGAAAATGGCGTTGCCCTGCCTGCCAGAACACGACGATTGATATACCAACTGAGTACAGATGTATGTGTGGCTCAATGAGAAATCCGGAGTATATACGGGGCGCTACCGGTGCTCATACTTGTGGACAAAGCTGCTCCCGACCAAGGTCATGCCCCCATCCATGCACTTTGCTATGTCACCCGGGACCATGTCCACCATGTCAAGCTACTGTTAAGAAAACGTGCAGTTGTGGTGCAGAGAGCCGCACATTGACATGCAGCAACAAACAGGCCCAGGTGTGCAGTCGGACGTGCAATAAGACACTGAATTGCAACATACACGTATGCCAACAAACATGCCACGAAGGGGACTGCGATACCTGCGATCAACTTGTCAAACAAGTATGTTACTGTCCGAGCAGTAAAAGCCGTGAGGTTCTCTGCGCGGCTGAGACGGCGACTGAAGTCTCCTGGTCGTGTGGCTCCGAGTGTGGCAGAGTGTTATCATGCGGTGCCCATGTGTGCAGGCAACCATGTCATCCGCCGCCCTGCCAACCATGCGAACTACTGCCTAGCTTGGTGAAACTATGCCCCTGTGGTCAGACTAAAATCAAGGAAGGACAACGCAAATCGTGCACTGACCCTATTCCTCTTTGTGGCAATCTGTGTGCTAAGCGGTTTGAATGCGGACCAGCTGGTGATAATCATTTCTGCAAAGTTGAATGTCATGAAGGTCCCTGCCCTATATGTCCAGATAAAACCGTGCTGCCATGCCAGTGTGGTCATACAAATCGTGAAGTGCTCTGTTCTAATTTACCACAGGAGGTTAATAATATATTCTGCCAAAAGAAATGCAATAAGAAATTGTCATGCGGCCGCCATCGTTGCCGCGCACATTGCTGCGTAGACGTGACACACAGATGTAGGTTGCAGTGCGGTCGTACTCTGTCGTGCGGCACACATAGGTGCGAAAATACCTGTCATACTGGACATTGTGCTCCGTGCCCACAAATTAGTTTCTCTGAGCTTACTTGTGAATGTGGTGCAGAAATACTTCTGCCACCAATCAGATGTGGTACTAGGCCACCACTATGCCAGAACCCATGTCAAAGAGAACGTGCCTGTGGTCATCCACCGCACCACTCTTGTCACAGCGGAGACTGCCCCCCCTGCGTAGTGTTGACAAGCAAAAAGTGTCATGGACAACATGAGGAAAGAAAAACGATACCATGTTCACAAGAGGAATTCTCGTGCGGTTTGCCGTGCGGTAAACCGCTGTCGTGTGGCAAACATAAATGTATCAAGATATGTCATAAGGGACCTTGTGATTCTGAAGCAAAGTGTAAACAACCGTGTACGGAGAAACGCGAGTGGTGCGGTCACCCGTGCGGCGCCCCGTGTCATTCAACCTGCGGTGGAGTATGTCCAACAACAACACCTTGCAGGCGACTTGTTACAGCAACATGTCCATGTAAAAGACGCACTCTACAGAGGCCGTGTGCTGAAAACCAGAGGGAACTTAATAAAATGATGAGCATCTTAGCAGCCACCAAGATACAAGAAGGTGAATCGGTGGACTTGGCTGATATGACGCGGCCAGGAAATAATCTTAAAACGTTAGAATGCGACGATGAATGCAGAGTTGAAGCTCGAACCCGCCAGATGGCGTTGGCGTTGCAGATTAAGAACCCCGATGTGTCATCGAAGCTAGCACCCCGTTATAGCGACCACGTCCGCCAATGGGCGACAAGAGATCAAGCATTCGCACAACACGTTCACGATAAATTGACTGATTTAGTTCATCTTGCTAAAAAGTCCAAACAGAAGACGCGCTCGCATTCCTTCCCATCTATGAACAGGCAGAAACGTCAATTTATACATGAGATGTGCGAACATTTTGGCTGCGAGTCTGTAGCTTATGATGCAGAGCCAAATAGAAATGTGGTTGCAACCGCTGACAAAGAAAAGTCATGGCTGCCAGCAATGAGTGTGTTAGAAGTGCTGGATCGTGAGTCAGGCAAACGTCGTGTCCCTGGGCCTATGTTACGTAACAGCGGAACTCAACAAACGCCCCAATCTACAACACTATTGTCATCTAGCTCTAATAAATCGACGGGTGGTTGGGCAACATTGACTACAACGAACGCTTGGGCAGCACGTAGTAAGCAAACCACAGCAGCGCCAGAGACAAAACCTGTCATAGACTACTTCGATTATCCACCAGATAGTTAA
- Protein Sequence
- MSQWNGDDSYNSRQYRDADNWGSNQGGQYRDQSNYYPNNYNQNGQYVSFNQFLAQMHSNGASSGSNYDRQHQSYGANHYTSAPSTSQVNHSNTPNQEVGSYGNNATASTSQSYSNDRVLNSKLTATATEFVPKNMHSQYTPEPPVAETTTLNGSEEQQPNNYRNRHPEEERKYETKFDRNRKPNLNKNRDPGNQRTFYNSNASQDVRNNSNSRNKNWFGTPRGRSERNYNEDENFANNYQHKSKPSPMRNKKVPDQELTHRERLSEQLDNGTLECLVCCEQLKQMNAVWSCTNCFNVQHLRCIRKWATSSIQEGKWRCPACQNTTIDIPTEYRCMCGSMRNPEYIRGATGAHTCGQSCSRPRSCPHPCTLLCHPGPCPPCQATVKKTCSCGAESRTLTCSNKQAQVCSRTCNKTLNCNIHVCQQTCHEGDCDTCDQLVKQVCYCPSSKSREVLCAAETATEVSWSCGSECGRVLSCGAHVCRQPCHPPPCQPCELLPSLVKLCPCGQTKIKEGQRKSCTDPIPLCGNLCAKRFECGPAGDNHFCKVECHEGPCPICPDKTVLPCQCGHTNREVLCSNLPQEVNNIFCQKKCNKKLSCGRHRCRAHCCVDVTHRCRLQCGRTLSCGTHRCENTCHTGHCAPCPQISFSELTCECGAEILLPPIRCGTRPPLCQNPCQRERACGHPPHHSCHSGDCPPCVVLTSKKCHGQHEERKTIPCSQEEFSCGLPCGKPLSCGKHKCIKICHKGPCDSEAKCKQPCTEKREWCGHPCGAPCHSTCGGVCPTTTPCRRLVTATCPCKRRTLQRPCAENQRELNKMMSILAATKIQEGESVDLADMTRPGNNLKTLECDDECRVEARTRQMALALQIKNPDVSSKLAPRYSDHVRQWATRDQAFAQHVHDKLTDLVHLAKKSKQKTRSHSFPSMNRQKRQFIHEMCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLDRESGKRRVPGPMLRNSGTQQTPQSTTLLSSSSNKSTGGWATLTTTNAWAARSKQTTAAPETKPVIDYFDYPPDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -