Ttri010501.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- topi
- Assembly
- GCA_905220615.1
- Location
- HG992332.1:3854536-3862197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.16 9.2 7.2 0.3 2 20 186 204 185 206 0.89 2 13 0.064 3.6 8.5 2.3 1 21 209 229 209 230 0.94 3 13 0.15 8.6 7.3 3.0 1 23 240 263 240 263 0.96 4 13 0.93 52 4.8 0.1 3 21 303 321 301 322 0.87 5 13 0.55 31 5.5 0.2 2 23 355 377 354 377 0.92 6 13 0.031 1.7 9.5 0.2 2 21 650 669 649 670 0.92 7 13 0.0057 0.32 11.8 0.9 2 23 676 697 675 697 0.97 8 13 0.42 24 5.9 0.6 2 23 811 832 810 832 0.96 9 13 3.2e-06 0.00018 22.0 2.8 1 23 838 860 838 860 0.99 10 13 0.0032 0.18 12.6 0.3 3 23 867 887 865 887 0.96 11 13 0.0018 0.1 13.4 1.5 3 23 895 916 893 916 0.95 12 13 0.12 6.8 7.6 0.7 1 20 922 941 922 945 0.94 13 13 0.02 1.1 10.1 0.1 3 23 954 975 953 975 0.91
Sequence Information
- Coding Sequence
- ATGAGTAGAAAACATGAACGTAAAAGCAAATTGGTACCCAAGAATGATTATGGAGAAAACGAGATCAAGAATAAGAAAGAGGTTCAAGAGATGGATGCTGAACCAAAAAATAAACTGGCTGCGAAATGGGATATTAAAATAGAAGTAGAACCAGTCGACGAATATAATCGCCCATTAAACAATGAAGCAGATACTAATGCAGACATGGACGACTATGAAATATCAAAAGCGATTGAAGACGAAAACAGTGAGCTACAAAGAATTTTAGGTGATCAAAATGAGAATGATTCTGATAATCAAATAGATTGTAATATGAACATTATAAGGAAACGACTTAAGGAGAAACTTGAAAAATTTTGGCAGTTAATATGGTATGTTCACCTTACTGATATATTTTGCAAAATATGCAATAAAAACATGAAGTTTACATTAAATACATTCAAAACTCACTTATACAAACAGCATACTGATCCGAGGATATTTGAAGTAGAAATAACTGATAATACAGTTAATATAATTACTGCTATAGATAAAACTAAACCAATAGTTGATTTGAAATGCTACAATTGTGATAAAACTTTCCAATTTCGAATTGCATGGAGCAAACATGTGTTAGACAAATTTCACGAATGTACCAACTGCTGGATGAAATATAGAAATTGTAAAGACTTAACTGAGCATACTAATGGAAATTGTAAAGCTGTAAGTGCATCAAATCATCGGTGTGGTGTTTGTTTGAGCTGCTTTAGAAGTGCGAAAGATTTGCTCGAACACAAAACTACAGTGCACAGAGTCAATTCCGATGAATGGATAGACGTGTTTGTTCAAAAATGTTTGTATTGCCAAGGGAAATATGTGGGTATCAGGGCAGCCCATTACTGCAAAACTCTAGGGCGTAGAGTACCATGTGGAGCTTGTGGGAAGCGCTTTCAGAACAGTTTGCATCGAGCAGTTCATCTGAAAGCATCTAAAAAAAACAAATCGATATGCCATATTTGTGGTCATGTAATGCAACTTGATTGTGAGAAAGAAACTCATGCTTGTTTCTTGGAGAAACGATTGCAGTGTACGGAGTGCATGAGTTTCTTCAACACAAGAGATGAAGTGATAAAACACCTTATCGAGGAGCATAGGATTTGGGAGAATATGGGTTTTGATGAACATATATTACAGTATGGTGGCACAACTGACATCAACGAAAAACAAATAGTCAATATGAAAAAAGGGAAAGAGGCGATAAAGGAAATGAAAGAAGTAGTAGAAATCCAAGACTGTGATCTAGAAGATGAAACCCAATCAAGTGCTTTAATATTAGAACAGTTATTGTCTGGGAATACGAGTGAACCGACGCAAACTGATGTCTACGTTGATGAGGAAGAGGAAGATGTAGATATTATTAACATATCTGGTAGCTACGACGAAAATGATGGACAATCAGAAAATAACGATTCTTATGCTCGGCAGTATGATGACATTGAAGATGACGCAAGCGACGATGACGATCGGAGAGTTCTTAAAATAGAACATGATCATCAACCAGCTATAAAAATCGAGCCCGATGATCAAACATCTATTAAAATAGAGGAAAATGATGAAATTGAAAATAAAATGAGCTGTAATGATCCGCCATCTGAGGATGATGATGTAATTTTAGTGCCGAATGAGAATCAGGAAATTGTTATAGATGAGGATTTGAGCATAAACACTGTTGTTACTAATGCAGGTTATGTTACGGTAAAGACTGAACCAATTGAATATCCAAATGGAATCACTAAACGAATGAAAATTAAAATGATTATGGATCCTTTAAATAAATTAGTTGTTTTAAAGGAAAATGAAGATATATTAAGCACGTTAGGTCATACAGTACTTGGTCATACGGTTTTTAGGGAAAATGGACATGAAAAATTGGTAAAAAATAAAAAAAATAAACAGGAAATAAGTTTAAATTGCCATATGTGTAATGTTAAATTCGAATCTCTTGAACTTCTATTAAGCCACATCGATACATTAGAATGTGCAGATTCGTGTAAATTCTGCAGTTTCAGGTCTAAAGATGCGGAACAGCTAGAAAAGCACATATTGAAACATATTCTACAGTACTACAACAAAAAGCATCGCAACAAAAAAGACGTAGTTTACGAATGTATACAGTGTGATTTAATACTTCCGAAAGAACTTCTCAAGGAGCATTGGGAATCGCATAAGGAACAAGAAGATGACCTTCCCGTTAAATTTAAAGATGAGCCACCATCCTTTCGAGGAGACGTAACTAAATTGTTAACGGCTAGTTTAACGAGGAAAAATAAGGCAGAAGAGAGGATTTGTGTGGCTTGCTCGAAGATTATAATACGGGAACAAGATTTTAAGAGGCATTGTATAGAGCATCTGCTTTCTGATGCCATGTTCAAAGGGGAACCTGACAAATTGACTTGTCAGTTGTGCGATCAAGATCTGGAGAGCGTTATGATGTATAAGCAGCACATGCGTTTCCATGGAAGGTTGACTCTGTACCAATGTAACATATGCATGAAGACTTTTAGTGACTCGAGTAACTTTACCAAACACCGGAAAGTACATAACCTACAGTGTGTCATCTGCGACCTTTGCAACAAGAAGTATACAAGTAAAGCTATTCTAATAAAACATCTACAAAGTCATGCCACAACGGAGCCAGTCAATTGTAAGATTTGTAACCAGCAGTTTCCTTTCATATCCACCTACAAACGTCATATGAAATACAGACACCAGCGGGAGGATAAGTATGTCTGCCAGAAGTGTAAAGCTCGATTCCGGTCGCTTAAAGACAAATGGAATCATATATGGTATGTCCACAAGATAAGAAAGGTGAAGGCTGATTGTCCGTATTGTCCAGCAGCGTACAGAAGGTATCATGATGTAAAAACGCATATCGGTCAGGCACATTCTGGGTTCCCGATACCCAATAGACTTTTTTTCCAAGTCAAGAAAATTTAA
- Protein Sequence
- MSRKHERKSKLVPKNDYGENEIKNKKEVQEMDAEPKNKLAAKWDIKIEVEPVDEYNRPLNNEADTNADMDDYEISKAIEDENSELQRILGDQNENDSDNQIDCNMNIIRKRLKEKLEKFWQLIWYVHLTDIFCKICNKNMKFTLNTFKTHLYKQHTDPRIFEVEITDNTVNIITAIDKTKPIVDLKCYNCDKTFQFRIAWSKHVLDKFHECTNCWMKYRNCKDLTEHTNGNCKAVSASNHRCGVCLSCFRSAKDLLEHKTTVHRVNSDEWIDVFVQKCLYCQGKYVGIRAAHYCKTLGRRVPCGACGKRFQNSLHRAVHLKASKKNKSICHICGHVMQLDCEKETHACFLEKRLQCTECMSFFNTRDEVIKHLIEEHRIWENMGFDEHILQYGGTTDINEKQIVNMKKGKEAIKEMKEVVEIQDCDLEDETQSSALILEQLLSGNTSEPTQTDVYVDEEEEDVDIINISGSYDENDGQSENNDSYARQYDDIEDDASDDDDRRVLKIEHDHQPAIKIEPDDQTSIKIEENDEIENKMSCNDPPSEDDDVILVPNENQEIVIDEDLSINTVVTNAGYVTVKTEPIEYPNGITKRMKIKMIMDPLNKLVVLKENEDILSTLGHTVLGHTVFRENGHEKLVKNKKNKQEISLNCHMCNVKFESLELLLSHIDTLECADSCKFCSFRSKDAEQLEKHILKHILQYYNKKHRNKKDVVYECIQCDLILPKELLKEHWESHKEQEDDLPVKFKDEPPSFRGDVTKLLTASLTRKNKAEERICVACSKIIIREQDFKRHCIEHLLSDAMFKGEPDKLTCQLCDQDLESVMMYKQHMRFHGRLTLYQCNICMKTFSDSSNFTKHRKVHNLQCVICDLCNKKYTSKAILIKHLQSHATTEPVNCKICNQQFPFISTYKRHMKYRHQREDKYVCQKCKARFRSLKDKWNHIWYVHKIRKVKADCPYCPAAYRRYHDVKTHIGQAHSGFPIPNRLFFQVKKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -