Ttri011399.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992334.1:1731658-1740255[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-05 0.0012 19.4 1.4 2 23 111 132 110 132 0.97 2 11 0.26 15 6.6 0.1 7 23 727 745 727 745 0.87 3 11 0.0015 0.083 13.6 1.2 1 23 1206 1228 1206 1228 0.99 4 11 0.27 15 6.5 0.2 2 23 1254 1276 1253 1276 0.89 5 11 0.031 1.8 9.5 0.1 3 23 1327 1347 1326 1347 0.97 6 11 0.0016 0.093 13.5 0.8 2 23 1353 1375 1352 1375 0.96 7 11 0.12 6.7 7.6 4.1 2 23 1384 1406 1383 1406 0.97 8 11 0.0002 0.011 16.4 1.1 1 23 1412 1435 1412 1435 0.96 9 11 0.00054 0.03 15.0 0.7 3 23 1441 1461 1440 1461 0.98 10 11 0.00024 0.013 16.1 6.1 1 23 1467 1489 1467 1489 0.98 11 11 0.05 2.8 8.8 0.6 1 20 1495 1514 1495 1515 0.94
Sequence Information
- Coding Sequence
- ATGGACGTGAAAATAAATAATATTTGCCAGTGCTGTTTGGCTGAAGGCTGTGAAAGGGAGCTTTATAGAGAATATAAATGGTTAGATGATAAAGAAGTATATGGTGATATGTTAGCAAACATTTTTAATATAAACGTCCCTAATGGTTTTATATGTGAAGATTGTATAATACATTTGAGACAATCCGGTTGTTTTAAAAACAAAGTTGTGGAGACGCAGGAATGTTTTCAGGGTATACTACATAGCGGTGGGATTACGGTCCGAGAGGGGGGGCGGAAGAACTGTCCACAGACATCTTTAAACAACAACTCTGGCGAGAACACGGAACTCAGATGCCCTACGTGCGGGAAACTATACAAGAGACAAGCCTGGTTCAAGAAACACTTAAAAACCCATGAAGGGAGTGAAGCACGACAGTCGTTGGTAAGTTCTTCACTTTGTACTACGGATAGAGTGAACACTCATACATCTCATGGTACACCTAAATCGGGTATCAACCAGGAGTCCATGAACATCAGGACACGTCTTAGCATCCCATCAATTAAGGATACAACTTGGAAGGCTCATGATCACAATTTGGCCGTCAGGCTTGACTGTCCTGGCAATAAACAAGATCTAGATAGCCAAGTAAAGACCTTCCAAGATACTATATATAACTACTTTAGTGAGCACTATCCACCAGCAACAGCTTATGCTCACAACAACAAAGAAAATACTTTTAAGCTAAAAATGAGACGAAAAAAGAGGGAATTGATAAAGAAACTTCGTTGGGCGAAGACTATGGGGGACAATCATCTGTGCCATCAGTTGGCCAGAGCTTTAAGATCTATTCTGAAATTAATTCAAGGAATCAGTCTCCAGATTGATGACCATCACAATCAGTTTAATAGGGCCAAACACGAGGTAGCTTTTGACAAAAACCCATTCGTCTATGCAAAAAAAATCTTTAGCAAAAAAAGTGGACGACTTTCGCTGACCAAAGAACAAATATACCAATACTACAGTGAGACATATGCAAAGACACATAAAGAGGAGTCATATATCGAACCACCTACACTGCGGCCTGATAATCCTAGCGTTGATTTTCAATGCAGCCCACCAAGCATTGAAGAAATTGAGGAACAAATTAAAAAGAAAAGTTCAGGATCAGCGCCAGGCCCAGATGGGATTCCCTACATTGTGTTCAAAAAATGTCAACACGTACGTAAGCATTTACATAACATCTATGGTAAAATCTGGTCAAGCAAACAAGTGCCGAAAGCTTTCGGAGAAGCAGTTTTTGTTCTCATTCCTAAGACAGCAAACGTGACTCATCCAACGGATGCAAGACCTATCGCGTTAACAAATACTGTGTCTAAAATATTCTTTTCAGTTCTACAGCATCAGTTGTTGCAAACTGCACTAAAGTGGTATAACTTTCCATCAGTGGTCATGGACATAATTGCCAACTATTACAATAAGTTAAGTTTTGTCATTGCAAACAAAGGTGTTTTTACCGATCCTCTAAAGTATAATGTAGGATTATTTCAAGGATGCTGCCTATCACCTGTAGCTTTTAATATCATCATAAACATACTAATTGATAAACTTAAGACTAAAGAGAAGAAATTTGGATATAGATTTAAACTAAACAATAAATATTCAGAGTCCATCCTAGCATTTGCTGACGACCTTGCAGTGCTAACGCGAAACGCAAAACAGTGTCAGGAATTACTGAAAGACATTGATCAGTTTTGCTCATGGACAAAAGGATTGAAAACAAAACCAACTAAATGCTTCTGTCTGAGTCTGGGCAGAAAAGACACAAAGTTCACCTCGTTTGATCCGGGACTGAACATGGCGGGGCAGAGGATAGCCCCTGTGGAGGAAGCTGTGCCTTTCAAATTTCTTGGCAGAAGGATTGACTTTAAGGGAAAAACTCCATCTTTAGAAGTAGTCATAGAAGGCTTCATTGAAGACATTAAGAAAATAGAAGAGCGGCCAATCGGCAATGTCAAGAAAGCCTGGATTTATGACAACTACTTAACATCCCGTCTCACATGGCCTTTTCTTGTCTATGATTTCAACAAATCCCTTCTATTTAAGCTGGATGCTGAAGTCATAAAAACGCTAAAGTCTTGGCTCGGACTGGCACGAGGCGCTGATTCCTCTACACTTTTTAGAGGTCAGCAGAATTTTGGAATGAGCTTCAAAAAACCATCTGAGTTATATAAACATCTACGTATAACTAAGCATCAAATCCTGACTAACTCTCGGGATAATTTAATTGCATCTCTTCCTAAAGATCCATTAGCCTCAGAGATGGAACCGAGACTTCAATTTCACAAAGCTTTTATGACCGGAGCACAGACAAGCAAAAAGGGATTAGGTTGGGAGAAAAAGAAAAGCGATAAAGAGGTGATAAAATCCTTACTCAAGCAGGACGAGGCACACGCCTATAGAGTGCACGCAACGACTCTAGAGGTACAGAATGAGTGGCTCACCCTAGGAGAGATATGTGTACCCCCAGCCTTGAAATGGCGAACAATAATGTATGATTGGTCTCCAGCGTTAGTAAAATTCTATCTTAACGCATTCCAAATGTCTCTGCCCGACCAGAGCAATCTGGTAAGGTGGGGTAAAGGCACTGATAAGACCTGTACATTGTGTGGTCTTGCCGTGGGAACTGCGAGGCATATTCTGGTGGGGTGTGTCACTCTACTTGATAGGGGCTGTTACTCGCGGCGACACGATAAAGTCCTGGAAATTATCCGTGAAGCAGTAAGTCTTAGCATTGGCAGAGCTAGGAAAGGTTTGTCCACAAATGAAAGACATATTACTTTTGTGAAAGAGTCCCATCTCAGAAAATCACAAAATAAGCCTTTCTCGATCCTGCGCGACGCACCTGACTGGAAAATACTCATGGATACATTCGAAAAGCACTACAAGATACCTGAAGATCTAGCAGTATCAGCCTATAGACCGGACATTTTAGTTTACTCTCGACACTTAAAAACTATTATCATCGTAGAGCTTACCGTTCCGTGGGAAACAAACATTCCAAAGGACCACAACATCAAGTCCAACAAATATTATGATCTCACGAACGAGATGACGAAAAACGGTTTTAAAACTCAGCTCTACGCAGTGGAAGTTGGCGCAAGGGGATTACCAGCAAAAACCTTGCATCATCTTTTAAAAAATCTTGGCCTCCCAAGGTCCGCCGTAACCACATTTTTGGATCATGCCAAAGTCGTTGTTAAGAAGTCTGATACATCAAATGATAATTACATTTCTGATGTTGTGAAAATTGAGCGGTTCGAGGAGGAATATTTGGAGTGTAATGAAAATGACAATATTTGCGAAGAGATTGAAGAGATGAAAGAGCCAGCACCTAAAGTGAAGTATAAGAAAGAGAAGCTGAAGAAAAAAGAAACTATTTTACCTAAAAAGAGAAAACGTGCTGTAAAGGAAGTCACTGTTAAAGTTCCTAAGAAAAAAATTAAAGTTGACCCCGACAACATTCATATTACGTCAACCCATTGGGAAATGCCTCTATCAGTACGTGAAAATGTCGCCACGCTAATAGAATTCTCCACAATAACCCCGTTCGTCTATATGTCATACCCCGGCTCATTCAAATGTTTATACTGCTTTGAGCCTTACAAAGATCTCCAGGAATTATTAAGTCACACAAGAACACATGATAACATAGATAAAAGAAGCCTAATTTTATATTTAAAAGGAAAACAAAACGTTAAAGCTGATATTTCCGAATTAAATTGCAAGATTTGTTCGCAGGAATTTAATGACATTAACACAATTAGGCGCCATCTTGTTGAAGAGCATGATATTTTTTTTACACCAACAGGCAATGGAATTATACCTTTTAAGATCCAAATAAAAAATGGTTCCTTTTTTTGCCATTTGTGTAGTAAACTATTTCATTCATTCTTTTTATTAAATACACATAATAATAGTCATTACGGTAATGCGATTTGTGATATTTGTGGCCTAGGGTTCGTTTCGTTTGGTAGGTTATTACAACACAAACAAATGCACTTAACAAAGGAGATACCTTGCACGAAGTGCGACAGGAAATACGGATCGACGACTAAACTTCAAGAACACATGAAAAAAGTACATTCATTACCAAAGAGAAAAACCTCTAAATGCACCCATTGCGAGGAGAGATTCGCGGACCATTACAAGAAATTAACACATCTGAGGGTAGAACACAATATTACGTTTAAATTCGAATGTGACAGCTGTCAAAAGGTTTTTGAAAGTCGAAAGGCGTTGACGCGACACACGACCAAAGTTCACATGCAGACGATTTTATGCGACGTTTGCAAGAAGTCGTTTACTGAACGAACGGTTTTGAAGAACCATATGGCAATGCATTTTGAGGAGAGGAATTTCCACTGCTCCTTATGCGACAAAACGTATAAATATGAGAAGAATTTGAAGTATCACATGAAAAGACACAATCCTAATTGGAATTTCGCTTGTTCCAAGTGTAAAGTTGGCTTTCCTAACAAAATGGAGTTTCGAAAACACAAAGAGGCTGGGTGTGAGGGTCCGGAAGATATATCTGAGGAGTCTTATATACCAGCTGAGGAGGTTTGCGTTTGA
- Protein Sequence
- MDVKINNICQCCLAEGCERELYREYKWLDDKEVYGDMLANIFNINVPNGFICEDCIIHLRQSGCFKNKVVETQECFQGILHSGGITVREGGRKNCPQTSLNNNSGENTELRCPTCGKLYKRQAWFKKHLKTHEGSEARQSLVSSSLCTTDRVNTHTSHGTPKSGINQESMNIRTRLSIPSIKDTTWKAHDHNLAVRLDCPGNKQDLDSQVKTFQDTIYNYFSEHYPPATAYAHNNKENTFKLKMRRKKRELIKKLRWAKTMGDNHLCHQLARALRSILKLIQGISLQIDDHHNQFNRAKHEVAFDKNPFVYAKKIFSKKSGRLSLTKEQIYQYYSETYAKTHKEESYIEPPTLRPDNPSVDFQCSPPSIEEIEEQIKKKSSGSAPGPDGIPYIVFKKCQHVRKHLHNIYGKIWSSKQVPKAFGEAVFVLIPKTANVTHPTDARPIALTNTVSKIFFSVLQHQLLQTALKWYNFPSVVMDIIANYYNKLSFVIANKGVFTDPLKYNVGLFQGCCLSPVAFNIIINILIDKLKTKEKKFGYRFKLNNKYSESILAFADDLAVLTRNAKQCQELLKDIDQFCSWTKGLKTKPTKCFCLSLGRKDTKFTSFDPGLNMAGQRIAPVEEAVPFKFLGRRIDFKGKTPSLEVVIEGFIEDIKKIEERPIGNVKKAWIYDNYLTSRLTWPFLVYDFNKSLLFKLDAEVIKTLKSWLGLARGADSSTLFRGQQNFGMSFKKPSELYKHLRITKHQILTNSRDNLIASLPKDPLASEMEPRLQFHKAFMTGAQTSKKGLGWEKKKSDKEVIKSLLKQDEAHAYRVHATTLEVQNEWLTLGEICVPPALKWRTIMYDWSPALVKFYLNAFQMSLPDQSNLVRWGKGTDKTCTLCGLAVGTARHILVGCVTLLDRGCYSRRHDKVLEIIREAVSLSIGRARKGLSTNERHITFVKESHLRKSQNKPFSILRDAPDWKILMDTFEKHYKIPEDLAVSAYRPDILVYSRHLKTIIIVELTVPWETNIPKDHNIKSNKYYDLTNEMTKNGFKTQLYAVEVGARGLPAKTLHHLLKNLGLPRSAVTTFLDHAKVVVKKSDTSNDNYISDVVKIERFEEEYLECNENDNICEEIEEMKEPAPKVKYKKEKLKKKETILPKKRKRAVKEVTVKVPKKKIKVDPDNIHITSTHWEMPLSVRENVATLIEFSTITPFVYMSYPGSFKCLYCFEPYKDLQELLSHTRTHDNIDKRSLILYLKGKQNVKADISELNCKICSQEFNDINTIRRHLVEEHDIFFTPTGNGIIPFKIQIKNGSFFCHLCSKLFHSFFLLNTHNNSHYGNAICDICGLGFVSFGRLLQHKQMHLTKEIPCTKCDRKYGSTTKLQEHMKKVHSLPKRKTSKCTHCEERFADHYKKLTHLRVEHNITFKFECDSCQKVFESRKALTRHTTKVHMQTILCDVCKKSFTERTVLKNHMAMHFEERNFHCSLCDKTYKYEKNLKYHMKRHNPNWNFACSKCKVGFPNKMEFRKHKEAGCEGPEDISEESYIPAEEVCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -