Basic Information

Insect: Tinea trinotella
Gene Symbol: -
Assembly: GCA_905220615.1
Location: HG992333.1:4795497-4830431[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.7 2.1e+02 2.9 0.2 2 21 380 399 379 401 0.79

2 16 0.0023 0.13 13.0 0.2 1 23 411 434 411 434 0.97

3 16 0.036 2 9.3 5.9 1 22 568 589 568 589 0.94

4 16 0.018 1 10.2 2.0 2 23 633 654 632 654 0.95

5 16 4.5 2.5e+02 2.7 2.1 1 23 667 692 667 692 0.88

6 16 0.00059 0.033 14.9 1.1 3 23 700 722 698 722 0.95

7 16 0.066 3.7 8.4 0.1 1 23 728 750 728 750 0.93

8 16 0.0024 0.13 13.0 3.3 1 23 756 778 756 778 0.98

9 16 0.085 4.8 8.1 0.3 1 15 788 802 788 808 0.81

10 16 0.014 0.81 10.5 0.3 1 23 885 907 885 907 0.98

11 16 3.8 2.1e+02 2.9 6.3 1 23 914 936 914 936 0.95

12 16 0.00095 0.053 14.2 2.0 1 23 991 1014 991 1014 0.95

13 16 1.7 98 4.0 0.2 1 13 1021 1033 1021 1034 0.91

14 16 0.43 24 5.9 0.3 2 23 1035 1057 1034 1057 0.94

15 16 0.0043 0.24 12.2 2.1 1 23 1086 1108 1086 1108 0.97

16 16 0.00011 0.0063 17.2 0.8 1 23 1114 1136 1114 1136 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.7	2.1e+02	2.9	0.2	2	21	380	399	379	401	0.79
2	16	0.0023	0.13	13.0	0.2	1	23	411	434	411	434	0.97
3	16	0.036	2	9.3	5.9	1	22	568	589	568	589	0.94
4	16	0.018	1	10.2	2.0	2	23	633	654	632	654	0.95
5	16	4.5	2.5e+02	2.7	2.1	1	23	667	692	667	692	0.88
6	16	0.00059	0.033	14.9	1.1	3	23	700	722	698	722	0.95
7	16	0.066	3.7	8.4	0.1	1	23	728	750	728	750	0.93
8	16	0.0024	0.13	13.0	3.3	1	23	756	778	756	778	0.98
9	16	0.085	4.8	8.1	0.3	1	15	788	802	788	808	0.81
10	16	0.014	0.81	10.5	0.3	1	23	885	907	885	907	0.98
11	16	3.8	2.1e+02	2.9	6.3	1	23	914	936	914	936	0.95
12	16	0.00095	0.053	14.2	2.0	1	23	991	1014	991	1014	0.95
13	16	1.7	98	4.0	0.2	1	13	1021	1033	1021	1034	0.91
14	16	0.43	24	5.9	0.3	2	23	1035	1057	1034	1057	0.94
15	16	0.0043	0.24	12.2	2.1	1	23	1086	1108	1086	1108	0.97
16	16	0.00011	0.0063	17.2	0.8	1	23	1114	1136	1114	1136	0.98

Sequence Information

Coding Sequence: ATGGAGGAAGAGCCTCCTTTAATATTATGTATGGAAAATGCAGCTGGTGAGGATGTGGCTTTAAAAATACACCCTGAAGATGATTTTCAATCATTTCTTGACAAAGCTAGATCAAGATTAGGCTTCGATGTAGACATAAACACGATAACCCGCAATGAACAAGTTAATTTAACTGATAATATATATAAATTTCTAATGAACGCAGAAAATAAATCAATAACAGAAACTACAGAACTAAACTTAGATATTTTAGAAGATAACGCTAGCAGTGACTTTGTTTATATGCTCGATGATGGAACCCAGATAGATGCTTCACAAATACAATTTGAAAATGACGAACCTGATGTCGAATTTAAAGTACAAGATTTGCCATTTACAAAACGAAAAGATGTTCTATATGAAGATGAAAATGATACATTAGATCGCGAGAATGTGATTTACAAAATTCCAGGATCTGTTTCACGTAAATTGAAGAGTATTAACCCAAAAACTAATTTCGCTTCCACGTTACCTTTTAAACTATTGACATTAAAAGCTAAACAATTCGAAGCGCAAACAACTCGTTATTTTAATGTACCTAAGGATAAAAATCTAAAACCTACGGAATTTAGGAAAGTAGGTAAAGATCTGAGAGAAGAAGTGGTAAATATAGTTAAAGATACAGCTGTAGTTACGTGCAATGAGGGTTTGAAAGACGTTAGAAGGAATGTAAGAAAGACAGATCCATCAAAACCTGTAATAAAAAAATTGGAATCGACTAATTTAGTTAATATAACAAAAAACAGCAGCCAACACTGTTTTATATGTGTAAAGTTTGTTGAAAGAAGTGAAAAGCTTTATATTTTCGACAAGGATGATCAGAAACTACACAGGTCATTGCCACAGAATAAACAATCGGATAAATTAAAGGAGCAATCAATTGATAAAGAATTACCAATTATAGAAAATGAAATAAAAACGGAATCTATAGTTATAGATGATATACCAGATATAGACGATGACGTCATTAGGGACGAAATGGTAGAGGCAGAAGAAGCAGAAACTATAGATGAGTCTACAATAGAAAATTTAGCGGAAATAGATGATGGTGTTAAGGAATTCCTGGGGAAACATCAAGCTGATGATACAGATGATTTGATATGTCGGTTCTGCAAAAAGGAGTTTACTGACATCCTGGATGTAATGGAACATGGTTCTGAACATAAGCATGAGACAGACAATGAAGACATTTATCCATGTCCTCTGTGTGATTATGGTTATGTTCATTACACCTGGTTAAAAGGACATTTAAAAGTAGCACACGGTAAAAAAGGAAATAAGGAAACAAATAATAGGAGTGAAGAAAATAATGATGTGGAATCTATAGAAAATCAAGACAATGATCACGTGTTAGATAAAAATCCAAATTCTCCACCAATAGCAACCAGAACGCGAAGTTCTAGAAGTAAAAAGAATAATGACTCAGAAGTAGAGATAATCAAAGATAAAACTAATGAAGAGGGCAAGATTGAAGATAAACATCCTCAGTCGTACGACATAAAAGTCGAAGTTAAGGAGGAACCAATAGACGATGATGATGGAATATGGATACTCGAAGCTGAAGAGGAGCATACACAGGAGGAAAGACTTGAGGAGTTGGTTTTGGAAGACAAGGTTGAAAAGAATAAACCGAAAGCTAAAATGTTTAACCTAAAAGATACACATAAATGTAACGTTTGCAAGCATTTCTTTATATCAAAAGAAACATTAAAAGCTCATAAATGTACAAAGAAAATTAATAAAAGACGGAGAATTAACAATTTTAAAAATGATGAACTCTATGAACCTGATGATGAAGTTACCAAGAAACAACGCAAGAAAAGAGGTAAAGACAACCCTTGTGACCCACAAATAGTAACATGCAATAACTGCAATGAATCATTCACTTCAAAAGTTAGACTAAAATTTCACATGCAATTCCACGACATGAACTGTTCGTCATTGACAGAGGAGAACAGTTACAAATGTACGGACTGCTCGAACAGTAACACCTTCGTCACTGAAACTGAATTGTTCGACCACGTGCACTTTCAGCACCCGAAATTGAAAAGGTGGCACTGCCCAGTTAAGGAATGCGGCAAGACTTTCTATTTGCGCGCTACACTAACAAAGCACAGTCGCATACACACGGACACGAGGCGTTACGTCTGCCCCGCATGTGGTAAACGGTTCCTTGACAAACAAACCTTAGACGAACATGGTGTTACGCATTTAAAGATAAAACCATTTCAATGCCACATATGTCTGAAGCAGCTGACCCGTCGCTCTCGGCTCCGCATGCATCTGCGTGCGCACGAGGAGGCACTCTCTCCAGCACTGGTCTTCGTGTGCAATCACTGCCAGAGGGCGTTTAAGGATCACCTGGAGGCGGAAGAGCACGCAACTTCATCTGTGGAATGCACCCAGAACCCTAGAACCTCTAGCAGAAACCTATCACCTACAACTGGATTGATTTATGATGAAAATGACAAGGAGAAAACAGAAGTCAGCACAACATCAAATAAACAAGAACCAGTAAAGCATGAGCCGACGAATAAACTGAAAGCGAATGAAATGATAAATTTAATAAATGACCCAAACAATATGATCGGTATTGTTGAAATAGAGAAGGCATTCCGATGCGAGTACTGTGAAGATGTTTTCTATTTAGAGGATGCGTTAAACAAGCATCGTTTAATTCACAAGGATGTGAAGGAGCCCTTTATATGTCATATATGTAAAGTTACATTTCCCACTTATTCCAGATGTACTACACACAAAACCACACACGGTTTTTACAAGCGTCCCTTAGCTGACGTGGTGAACACTTCTGAAGATGGCGTAAGGTCGCAGTCAGAAGTTTTGAAGTTGCAGTCTGACGTCACCAAACGCCATGAGAATATTCCTGCAAGTGGAATATTAGGATATGGAGGTTTTCCTGTGGTCAAGCATTTTCTTTGTGAGGATTGTGGCCGGTCTTACTTACACTGGACATACTTGCAAGTACATCGACGTACGAAGCATCCCGGCAAGAGTTTGATTTATGAATGTGGACAATGCCATCTTACGTTCCCCAACAGGATACCATGTCGTGATTGTGAAGAAATATTGCCAAACAAACATGCACTCTATTTACATAGAAGTAAAGAACATTGCGATATATCGAATGATATAGATGACAATGAATCCTTGAACGCAAGTGAGAGGTCCCGTCTAAGTGATAGATCGCGTCAGAGATATTTTTGCCTCGTCTGCGGACATTCGTTCCGCACTTTGACATTACGTACGGAACACTTGCGGATACACACCGGTGAAAAACCATTTGTCTGTCAAGATTGTGGTGTCGCTTTTAGAAGATTAACTACATTTCGTAATCATCGTGTAACACATCTTCCTCTTCACGACACACCGAAAATAGTCACCATATTTATAGAGGTACCAGGTTTGTATCCAACTGGAGAAGAAATCAAAGCCCAATTGAATAAAAACAATATAACGGTCGAAAAAATTGTTGATGTATTCAAAATATCATATAAACAGGGTGAACCACGAACGATACCAGACAACGAGGATCAATTTAAAACTATAATGAAAATGAAGTCCGAAGACACAGAGTGGAAACAAGATATAATTAATTATTTTAATAATAGAAGTAAAAATGAAAGTATAGATGTGACAACGCAAAATGAGCGTTCCTTCCCACAATTGCACCGGCCGAATATATTACAAAGAAGTGGAACTGGATACCCTATAACACTGAATTTCACCGGTGAGGAAGTATCAGACATTAACGTGCAACTGCTATTGCCTGACGGTGTACTCCTTAATGGGTCGCAGATGGTGCAGCTAAATCCTCATCATCAGCTATTGCCAGACGAAAATATTAATATTTAA
Protein Sequence: MEEEPPLILCMENAAGEDVALKIHPEDDFQSFLDKARSRLGFDVDINTITRNEQVNLTDNIYKFLMNAENKSITETTELNLDILEDNASSDFVYMLDDGTQIDASQIQFENDEPDVEFKVQDLPFTKRKDVLYEDENDTLDRENVIYKIPGSVSRKLKSINPKTNFASTLPFKLLTLKAKQFEAQTTRYFNVPKDKNLKPTEFRKVGKDLREEVVNIVKDTAVVTCNEGLKDVRRNVRKTDPSKPVIKKLESTNLVNITKNSSQHCFICVKFVERSEKLYIFDKDDQKLHRSLPQNKQSDKLKEQSIDKELPIIENEIKTESIVIDDIPDIDDDVIRDEMVEAEEAETIDESTIENLAEIDDGVKEFLGKHQADDTDDLICRFCKKEFTDILDVMEHGSEHKHETDNEDIYPCPLCDYGYVHYTWLKGHLKVAHGKKGNKETNNRSEENNDVESIENQDNDHVLDKNPNSPPIATRTRSSRSKKNNDSEVEIIKDKTNEEGKIEDKHPQSYDIKVEVKEEPIDDDDGIWILEAEEEHTQEERLEELVLEDKVEKNKPKAKMFNLKDTHKCNVCKHFFISKETLKAHKCTKKINKRRRINNFKNDELYEPDDEVTKKQRKKRGKDNPCDPQIVTCNNCNESFTSKVRLKFHMQFHDMNCSSLTEENSYKCTDCSNSNTFVTETELFDHVHFQHPKLKRWHCPVKECGKTFYLRATLTKHSRIHTDTRRYVCPACGKRFLDKQTLDEHGVTHLKIKPFQCHICLKQLTRRSRLRMHLRAHEEALSPALVFVCNHCQRAFKDHLEAEEHATSSVECTQNPRTSSRNLSPTTGLIYDENDKEKTEVSTTSNKQEPVKHEPTNKLKANEMINLINDPNNMIGIVEIEKAFRCEYCEDVFYLEDALNKHRLIHKDVKEPFICHICKVTFPTYSRCTTHKTTHGFYKRPLADVVNTSEDGVRSQSEVLKLQSDVTKRHENIPASGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRTKHPGKSLIYECGQCHLTFPNRIPCRDCEEILPNKHALYLHRSKEHCDISNDIDDNESLNASERSRLSDRSRQRYFCLVCGHSFRTLTLRTEHLRIHTGEKPFVCQDCGVAFRRLTTFRNHRVTHLPLHDTPKIVTIFIEVPGLYPTGEEIKAQLNKNNITVEKIVDVFKISYKQGEPRTIPDNEDQFKTIMKMKSEDTEWKQDIINYFNNRSKNESIDVTTQNERSFPQLHRPNILQRSGTGYPITLNFTGEEVSDINVQLLLPDGVLLNGSQMVQLNPHHQLLPDENINI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -