Ttri011397.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992334.1:1721463-1728803[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.005 0.28 12.0 0.1 2 23 256 278 255 278 0.94 2 9 0.32 18 6.3 0.2 3 23 305 326 303 326 0.95 3 9 0.055 3.1 8.7 1.7 1 23 351 373 351 373 0.97 4 9 0.00045 0.025 15.3 0.1 2 23 378 400 378 400 0.96 5 9 7.5e-05 0.0042 17.7 1.3 2 23 404 426 403 426 0.95 6 9 0.0015 0.085 13.6 0.2 2 23 433 455 433 455 0.92 7 9 0.00084 0.047 14.4 1.9 1 23 462 485 462 485 0.95 8 9 0.00016 0.0088 16.7 3.8 1 23 491 514 491 514 0.97 9 9 0.015 0.83 10.5 2.1 2 23 521 544 520 544 0.92
Sequence Information
- Coding Sequence
- ATGGAGGTTGAAGATGAGAAAAGTGATGTTACAGCGTTTAATACGAATGTATGTAGATGTTGTTTAAGTATCGGTTGTTACAAGAATCTTACCACTGAATATTACTGGTTAGGTCAATCAGAAATATATGAAAAGATGCTTAAAGAAACGTTTAATATATGCATATCCTACCACGAGAGTGGAGATTTGAACTCAGGTTACCATTTGATTTGTGATGAATGCATACAGAAGCTGCGGGAAGCAAACACATTTAGAAATCTTGTTATACAAAGTGATGCTATTTTTTCGAAGCAATTAGGTGATTTTAAGAAGACTCATACTGGTAAATATGGCAAATTCACTGGCAGTCACAAGACAACAGTAGAAATAGAAACTGATGATGTAAAGGATATAAAACAGGACGATGATGAGAACTTTGATTCCAATGACTTTGGTGGTGACAGCTTCGATGATAATGATTTTGCTGTTGGCATAAAATTGGAGCCGAAAGAGGATGACGATTCTGACTATGATATTTCATTGGATACTTTAAAGAAAAAGGAGGCGAAAAGAAAAACAAGTCCAAAAGCAAAAACTAAACGCAAAAAAGAAAAATCAACAGAAGTAACTACTAAACGCAAGTCTAAAGGAAGAAAGGCATTCCTGGCATACGAACCGATTTACGTACAAAGCGAGGATAGTGAAAAAAAATTCCTAAAAGAAAACACCTTAAACCTAATACTCAATTCGAATGTATGCTTATTTCGACATAATAGGACGAGACTAAAATGTTTTGTGTGCGACGAGACATTCATTGAAATGGAGGATTTGAGAAGCCACGTTGACAAAGGACATTCAGAAAAGGACGTGTGCGTCAAAGTTAAAAATTTAAAAATGGTCAATTTGAAAAAAGTCGACATTTCCGACTTAGCTTGTAACATTTGTAACGAGAAACAAGACTCGCTTGTGACTCTAAAATCTCATCTAATAACCTCCCACGATATTTGTTTCCACAATATAGATAAAGAGATAATTGTTCCATATATGTTGTGTAGGACTAAGATGAATCATTTCAATTGTTGTCTGTGTAATTTAGAATTCAAAGCGTTCAATAAATTAGTCATACACATGAATGTACACTACCAAAATAATGTGTGCGACACCTGCGGCGCGGGGTTCCCTAATTTAAGTGGCCTACAGAACCACAAAAGGAACCTCCATAGGATTATTAAATGTAAACTATGTAATGAAGTATTTAACTCCAGTTCCAAGATGCAGCGGCATAGGATTAAGGAACACAAGATAGTTCCCAAAAGGAAGTGTCCGATCTGCGAAGTCACGTTCCGTTACAGCGAACAACTGTACCTACACAAAATCGAAGAGCACGGCTTCGAAAGGACACAATTCAAATGCCACTATTGCGATAAAACATTCCTTATAGAGTATCTACTTAAATCACATATCAAAGCCGCGCATTTTAGACAGAAAAAGCATCAATGTGTCAAATGTAATAGTAGTTTTTATTCGAATTACGAATTGACAAGGCACCTTAACACGACGCATGTCAGCGAGAAAGTTGTGTCGTGTACATACTGTAACGCCAAATATAAGTGTATAAGTTCCCTTAGAAGGCACATGAAGACGGCCATTCATAAACATCACGCGATAAATGGCTGTTTACCATAA
- Protein Sequence
- MEVEDEKSDVTAFNTNVCRCCLSIGCYKNLTTEYYWLGQSEIYEKMLKETFNICISYHESGDLNSGYHLICDECIQKLREANTFRNLVIQSDAIFSKQLGDFKKTHTGKYGKFTGSHKTTVEIETDDVKDIKQDDDENFDSNDFGGDSFDDNDFAVGIKLEPKEDDDSDYDISLDTLKKKEAKRKTSPKAKTKRKKEKSTEVTTKRKSKGRKAFLAYEPIYVQSEDSEKKFLKENTLNLILNSNVCLFRHNRTRLKCFVCDETFIEMEDLRSHVDKGHSEKDVCVKVKNLKMVNLKKVDISDLACNICNEKQDSLVTLKSHLITSHDICFHNIDKEIIVPYMLCRTKMNHFNCCLCNLEFKAFNKLVIHMNVHYQNNVCDTCGAGFPNLSGLQNHKRNLHRIIKCKLCNEVFNSSSKMQRHRIKEHKIVPKRKCPICEVTFRYSEQLYLHKIEEHGFERTQFKCHYCDKTFLIEYLLKSHIKAAHFRQKKHQCVKCNSSFYSNYELTRHLNTTHVSEKVVSCTYCNAKYKCISSLRRHMKTAIHKHHAINGCLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -