Ttri013355.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- ken
- Assembly
- GCA_905220615.1
- Location
- HG992331.1:7090629-7094159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.5 5.3e+02 1.7 0.5 1 23 165 187 165 187 0.94 2 18 0.00044 0.025 15.3 0.6 3 23 253 274 251 274 0.95 3 18 1.5 86 4.1 2.4 1 20 283 302 283 304 0.86 4 18 0.00025 0.014 16.1 0.9 2 23 336 358 335 358 0.96 5 18 0.072 4 8.3 9.4 1 23 364 387 364 387 0.94 6 18 0.0023 0.13 13.0 0.1 2 20 392 410 391 412 0.92 7 18 0.11 6.4 7.7 0.1 1 23 420 443 420 443 0.92 8 18 0.00046 0.026 15.2 0.9 2 23 446 468 446 468 0.93 9 18 0.098 5.5 7.9 0.0 2 23 473 494 472 494 0.95 10 18 0.72 40 5.2 4.8 1 23 500 523 500 523 0.93 11 18 1.5 84 4.2 2.4 3 20 530 546 528 549 0.92 12 18 0.026 1.4 9.7 2.3 2 23 565 586 562 586 0.93 13 18 0.22 12 6.8 0.2 2 23 591 611 590 611 0.96 14 18 0.11 6.2 7.7 1.2 1 23 621 644 621 644 0.96 15 18 0.0039 0.22 12.3 6.3 1 23 650 672 650 672 0.99 16 18 0.00014 0.0079 16.9 3.2 2 23 681 702 681 702 0.98 17 18 0.0086 0.48 11.2 1.9 1 23 708 731 708 731 0.95 18 18 0.0094 0.53 11.1 0.1 2 23 737 759 736 759 0.96
Sequence Information
- Coding Sequence
- ATGCTAGAAGTACATCGACTCCTGGACTCAGAAGAAACGCATTGTTATGAAGATATGAAAAAAGCTGAATTTATCAGATGGAAACATAAATTAAAAACGATTTTTCATACTACACGATATTGTAGTGTTTGTATTGAAGAAAATGACACCATGTACGACATAGATGCGACTGTCTGTATCAAAGAAATAAGTAAAAAATATAATTCCACTTTTCGCGATATTATATCTACATTGTGTTTAAGTAACAGTCAACAAATATTTGCCAGCAGCTTCATTTGCGTTGACTGCGCTAAAATTGCAATACAATCAACAATATTCACCAGCAAAATCAATACATCAGCTAAAATACTTCAGAGTTGTTTTAAAAAAATCGAGGAGAACATTGACGATACTTTTAACAGCATAGATAATTTTGATGTCTACGAAAAAACACTCATTTGCTTTGATTTGAGAGAAATTATTGAAAACCATAAAGAGATTAAAATTATAAGATATAAATGCTACTCATGTTTGCTAGAGTTCATGGACGAAGAAATTTATAAAAAGCATCTCGCAATGCATATAGCTGCGGAAACTCAAAACTGTGTGACTAACAAACATGTAGTTCAAGAAGTTAAAACCAAGGAGACTATTAAAACCATGGCAATAGAGAAAGAAATTGACGAAGATAAAACAGAATGCGACGAATGCAAAGTTTTCATTAAAAAATCAGAAATAGACCAACATAAGAAATGTCACGAACAAAGACTTTGGAACTGTAGCGCTTGTGACAAAGTTTTTTACAGCTCCAGTAGCTTTTCAACACATTTAATCACTAGACATAATATAATGTCAAAGGAATTTATATATACTTGTTCAATCTGTTATAAAAGCTACTTAACGAAAGAAACTCTGGACGGCCATAAGTGTAAATATCGATGCTCCGAATGTCCGGAAATCCCTTGTCAACACGAAGAGTATTTAATAAGTTATAAAAATCAAAAAGAAGCTGGTTCTAAAACTGTAAAATGTCCTAAGTGTAATTATGTATGTCCGAGAAAAAACAGTTTAATCTCCCACGTTAATATGGAACACTTGAATTTTTACAATCATTTTTGTCGCGAATGTGATCAAAGTTTTCACACAAAACATTCGCTGACTCAACATAAATTAAAATTCCATAAGGATGTGTTAATATGTGAATATTGCGATAAGTCATTGAAGGGAAAAGGTAATTTAGAAACACACAAACTTGGTTGCAAAGATATAGAACGCGATTTCAAATGTAGCCAATGTGTGGCTAATTTCGACAACAACATTAGCTTATTGGAGCATGTTGGTATAAAACATTCAAACGTTTGTTTTGTGTGTAATCATAAGTTCGACAATTCAGACGAATTAAAGACACACATGGAAGAAGCCCACAAAACCAAGATCTCTTGCACTATGTGTTATGAAGATTTCTTCGATGAAGCAGAGTTTAACGCCCATGTAGCCATACACCCTAGCGACACAAAACACATCTGCAGACAATGTGATATTACTTTCAATTCTAAATTCAATCACAGAACTCATTTGACGATTAGCCACGGAATTGGTAAAGTTATTTGTGAAGTTTGCAAGAGAGCTGTAAATGAGTGCAATTTGCAGAAGCACATGGAATGTCATGCTAAAACGAAGAATAAGAAAGAAAAGCACGTGAAATATGTTTGTAAATGCGATTTGTGCAAAAAATGGTTTTCGTCCATTAAAGTTTTGAAACGTCATATAATTAAACACAAAGAAGAAGTCCAATGTGAAATATGCTTAAAGTTCTTACGTCCAATAAACATGGAAAGGCATTTACTGAGCCACACAAGCAAAGAATCGGGCAGAAAGAAATTTAAGTGCACTGAATGCGATTACGAATCCAATTACCCCTTATGTTTGGATGCCCACACAAACAGAATTCATGCAAAAATAAGACCATATACATGCTGTAAGTGCGAGAAATCATTTTATGGCAAAATAACACTGCACGAACATATGAAAAGTCACACAGATACAAGTGTTACAGGGAGACAATGTGAATATTGCGGGGAATACTTCTGCAACAGTTTCTCACTCAGAACTCACACGAGACTGCATACAGGGGAAAAACCGTACTCCTGCCACCAATGCGGTGAGAAATTCATATCGGCTAGTAGAAAAAATGAGCACGTGTTAAAACGACACACGTCCCCTTCAATACCGTGTCCGATTTGCAATAATATGTACTTCTCAGCCAGGGATGTAAGGGCGCATATAAAAAAGATACATTGCAATGTACGAAAAGGTGATATTAATATATCGCAAATGCAATTGTCAGAGAAAGATATGCATATTTTTAAGGATAAAAGAGTTTTGTAA
- Protein Sequence
- MLEVHRLLDSEETHCYEDMKKAEFIRWKHKLKTIFHTTRYCSVCIEENDTMYDIDATVCIKEISKKYNSTFRDIISTLCLSNSQQIFASSFICVDCAKIAIQSTIFTSKINTSAKILQSCFKKIEENIDDTFNSIDNFDVYEKTLICFDLREIIENHKEIKIIRYKCYSCLLEFMDEEIYKKHLAMHIAAETQNCVTNKHVVQEVKTKETIKTMAIEKEIDEDKTECDECKVFIKKSEIDQHKKCHEQRLWNCSACDKVFYSSSSFSTHLITRHNIMSKEFIYTCSICYKSYLTKETLDGHKCKYRCSECPEIPCQHEEYLISYKNQKEAGSKTVKCPKCNYVCPRKNSLISHVNMEHLNFYNHFCRECDQSFHTKHSLTQHKLKFHKDVLICEYCDKSLKGKGNLETHKLGCKDIERDFKCSQCVANFDNNISLLEHVGIKHSNVCFVCNHKFDNSDELKTHMEEAHKTKISCTMCYEDFFDEAEFNAHVAIHPSDTKHICRQCDITFNSKFNHRTHLTISHGIGKVICEVCKRAVNECNLQKHMECHAKTKNKKEKHVKYVCKCDLCKKWFSSIKVLKRHIIKHKEEVQCEICLKFLRPINMERHLLSHTSKESGRKKFKCTECDYESNYPLCLDAHTNRIHAKIRPYTCCKCEKSFYGKITLHEHMKSHTDTSVTGRQCEYCGEYFCNSFSLRTHTRLHTGEKPYSCHQCGEKFISASRKNEHVLKRHTSPSIPCPICNNMYFSARDVRAHIKKIHCNVRKGDINISQMQLSEKDMHIFKDKRVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -