Ttri010770.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992329.1:919974-938721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.16 8.8 7.3 2.1 2 23 289 311 288 311 0.89 2 14 0.0033 0.19 12.5 1.6 2 23 318 339 317 339 0.97 3 14 0.21 12 6.8 0.9 1 23 343 365 343 365 0.96 4 14 0.029 1.6 9.6 0.6 1 23 371 394 371 394 0.97 5 14 0.0033 0.19 12.5 2.9 3 23 400 421 398 421 0.95 6 14 0.67 38 5.3 3.0 1 19 452 470 452 473 0.94 7 14 1.3 71 4.4 0.0 3 13 507 517 506 519 0.88 8 14 9.6e-06 0.00054 20.5 2.3 1 23 532 554 532 554 0.98 9 14 4.7e-05 0.0026 18.4 2.7 1 23 560 583 560 583 0.98 10 14 0.00046 0.026 15.2 4.3 1 23 893 915 893 915 0.96 11 14 0.00076 0.043 14.5 1.5 1 23 922 944 922 944 0.97 12 14 0.15 8.6 7.3 0.8 1 23 948 970 948 970 0.94 13 14 0.95 53 4.8 0.8 1 23 975 998 975 998 0.84 14 14 0.0031 0.17 12.6 1.5 1 23 1002 1025 1002 1026 0.95
Sequence Information
- Coding Sequence
- ATGAAAGATAATATAGACTTTTGTCATATATGTTTGGCTACTGACATTAAAATATTTTGTGAACCACAGCTTCAATCTTGGTATAATGATATTATTTATTCAAATATGAATTGCTACACAAAAGAGAGAAACACATTTTGCTATGAATGTGCATATTTATTAATGAAAAACAATACATTTAAAGAAAAATGTTTGAAAGGACAGAAAGCTTTAGAAGAAATAAATTTATCAGAAATAAGAACAGCTATGCAAATAGACATAATAAGAGAAAAACAAAACTTCAACACAAAACTATCTTCCGAAAACACATTAGAATTAATAGATATTAAACCAAATGTCACAGAAGACATAAAAATAGAAACAATAAAGACTGAAAACACGGATCCATTACAAAATTCAAATAGAAGACATTTCTTACAAATAGAATATATAGAAGAATTTAAATGTAAAAACAATGAAACTGAAACTCATATGAATCCAATAAATAATATTATTAGTGAATTAAGTAATTCATCAATACATGATTTAGAAAACACTGAGTCATGGAATTACAATGAAGATGAAAAAGAGTCATGGTTAGTTGATATCAAAATTCCAGAAGTAGAAATCAAAGTTCCAGATGTAGAAATCAAAGATCCAGGTGTAGAAGTCAAAGATTTAGATGTAGACGTAAAAAGTGAAATTCAAAGTGTAAATAAAAGAAAAAGAAAAAAGAGGATAAGTTCTGATGAAAAATCTGAAGATAAAATTTTTAGTGTGTACATCAACATATCAAAATGGCTTGTGTCAAAATTAAATGAGGAACAAGTGTTGCTAGAGTTTAAAAAGAGAGCAGAGTTGCCAACTTATATAAAATCACCACTAAAATGCACAAAGTGTTTACGAGGTTATTATCATAATGATACATTTACGAGGCATAATATACTCGCTCATAATCAGAAAAACTCAGTGGTCTGCGAAGTTTGTAATTATCGTTTAGATAGCAAATGCAAATTAAAGAAGCATATGCTCATACATCGTTATAAATTTCAATGTCGGATATGCGACTATTCTACACATAGTTTGCCATCTGCTAAATTACACCAGGAGGTCCATGAGTCAGGAAGGAAGTACGTCTGCAAAATATGTGCTGAAGTTTTTCTTCATGCATCATCATACTACTCCCACGTCCGCGTCACCCACAAGTCTGAACATCTATGCTTGATGTGTGGAAAGTCATTTGTTAGTTCAATGGGTGTTCTGCATCATATGAAGAGGACACATTATATTGATGATAGTAAAAGGGCGAGGAAGAGGAAGGAGGGTTTGCAGAATACGACAGATAGTCCAATTATAGCTGACAAGGAGAGTAAATATTACTGTAGCACCTGCGAGGTTACATTCTGCAATGAGAATGCTTACAAAATGCATTTCATACATTCATCCAAACATATTGATCATAAATTGGTCAAATCTATAGTTGTGAATGAAAACTCAAAGAAAATAAGTGAAGTTTTACCTACAGAGGTAATGGTATTGTGTGAGATATGCGGGAAATCTGTTAAAACTGCCACACTGGACTGCCATCGCAACTCGCACACACACGAGAGGATGTACAAATGTGACCTTTGCCATTTGGAGTTCACGCAGAAAGCATCACTTAATAGGCATATGGTGAGACACACCGGAGTGAAAGCTTTCAAATGTGATATGTGTGAGAAACGCTATACGCAATGCGGTAGTCTAAAGTTACATGTTAGGACCGCACATCTTAATTTACCATATCCAAAGAGAAATAGATGGAATAAAAAGAAAATTGAGAGACGTCACATCAGAGATAGTCTCAAGGACATCAACATTTCCCCTTTGTATAGGCTAATACGTTCAGCAGACTTCTCCGTCAGCCGCTTGAACAACTCCTTGGCCAGGCGCTTGGATGAAGGTTCCCAAGGGCCTATTCGTCTCTACCCCGAAATGTGCAAACTCGTAACCAGTACCGTGTTGTGCGGAGATTTACCAAATTATTTATGTAATGAATGTGCAATGTTACTTTTGAAGTATTATAAATTTAAGTTAAAAGTTAAAAGAGGACAGGAATGCTTCAGAAACTTTATCAAGAATAATACTATTTCGCAAGATGCTATTGAAAGGAGACGCAAAGATTACAACCTTAATTCAACTTTGAAAACAACTAACATAAAAGTTAATTTTAATTATAATACTGAGGAAAAACCTGAACCAATAGAGATAGAATCTGATGATGATACTGAATTTACTACAAATCATTTCTTAGACAATTTTAAAATAAAATTAACGAATAATTTAAAATTAAACGTAATAAAAATAGTAGACACCTTTAGTATGGAAAATAATACTGAGGCAAACACTGAACCAGAAAAGATAGAATCTGATAATGATGCTGAATTTACTACAAATGATTTCTTAGACAATTTTGAAATAAAATTAACGAATAATTTAAAATCAAACGCAAGAAAAAAAGTAGACAACTTTAGTATGGTAATAAATAGAAAAGAAAAGAACAATGCGATAAAAACTTATTTGCCAACGGAGGAAAATAAAAAGAAATCGAATAGTAAAATTGAAATTGATTTGAAAAAATGGAAAGTATTTGAATTAAATGAGAATGATACTGTCATAGAATTTAATCGTCGTAATCAAAAGTATCAAAATTGTTTATTTACCTGTGATTTGTGTCACCATGGGTTTAATAGCAAAGATACATTGGAAAGACATATGGATTTTCATAGTGAGGCCCGGGGCCCTTTTGAATGTGCAGTGTGTAAGAAGCGCTTCAAATGGCAAACTATGTTAAACCGTCACATGTCGCAACATACTGTATCATACCTTTGTATGAGGTGTCCGAAGATTTGCAGCAACCCGTCCCAAGCGCTTGTGCATGAGAAATACCACGATGGGATTGATTATATTTGTAAAATATGTGGTGCCAAGTTTCTAAAAATAACCACATACTACTCTCACGTCAGACTGAAGCACCCATCAACATTCATATGCACAAGTTGTGGCTTGTCATTTGTTAGTGAAACTGGATTGACGCAGCACAGGACAAGACAACATCACCTCCAAAATACGGTTCGTTAA
- Protein Sequence
- MKDNIDFCHICLATDIKIFCEPQLQSWYNDIIYSNMNCYTKERNTFCYECAYLLMKNNTFKEKCLKGQKALEEINLSEIRTAMQIDIIREKQNFNTKLSSENTLELIDIKPNVTEDIKIETIKTENTDPLQNSNRRHFLQIEYIEEFKCKNNETETHMNPINNIISELSNSSIHDLENTESWNYNEDEKESWLVDIKIPEVEIKVPDVEIKDPGVEVKDLDVDVKSEIQSVNKRKRKKRISSDEKSEDKIFSVYINISKWLVSKLNEEQVLLEFKKRAELPTYIKSPLKCTKCLRGYYHNDTFTRHNILAHNQKNSVVCEVCNYRLDSKCKLKKHMLIHRYKFQCRICDYSTHSLPSAKLHQEVHESGRKYVCKICAEVFLHASSYYSHVRVTHKSEHLCLMCGKSFVSSMGVLHHMKRTHYIDDSKRARKRKEGLQNTTDSPIIADKESKYYCSTCEVTFCNENAYKMHFIHSSKHIDHKLVKSIVVNENSKKISEVLPTEVMVLCEICGKSVKTATLDCHRNSHTHERMYKCDLCHLEFTQKASLNRHMVRHTGVKAFKCDMCEKRYTQCGSLKLHVRTAHLNLPYPKRNRWNKKKIERRHIRDSLKDINISPLYRLIRSADFSVSRLNNSLARRLDEGSQGPIRLYPEMCKLVTSTVLCGDLPNYLCNECAMLLLKYYKFKLKVKRGQECFRNFIKNNTISQDAIERRRKDYNLNSTLKTTNIKVNFNYNTEEKPEPIEIESDDDTEFTTNHFLDNFKIKLTNNLKLNVIKIVDTFSMENNTEANTEPEKIESDNDAEFTTNDFLDNFEIKLTNNLKSNARKKVDNFSMVINRKEKNNAIKTYLPTEENKKKSNSKIEIDLKKWKVFELNENDTVIEFNRRNQKYQNCLFTCDLCHHGFNSKDTLERHMDFHSEARGPFECAVCKKRFKWQTMLNRHMSQHTVSYLCMRCPKICSNPSQALVHEKYHDGIDYICKICGAKFLKITTYYSHVRLKHPSTFICTSCGLSFVSETGLTQHRTRQHHLQNTVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -