Ttri013253.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992331.1:5224243-5228238[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.59 33 5.4 3.0 2 23 280 300 279 300 0.92 2 13 0.0045 0.25 12.1 3.3 1 21 338 358 338 359 0.97 3 13 0.0095 0.54 11.1 4.6 1 22 370 391 370 395 0.93 4 13 3.2e-05 0.0018 18.9 0.4 1 23 446 468 446 468 0.97 5 13 0.00035 0.019 15.6 2.7 1 23 473 495 473 495 0.98 6 13 0.017 0.98 10.3 1.6 2 23 517 539 516 539 0.92 7 13 0.00058 0.032 14.9 1.0 1 23 543 566 543 566 0.96 8 13 0.0028 0.16 12.8 0.1 2 23 589 611 588 611 0.90 9 13 0.004 0.23 12.3 0.3 1 23 624 647 624 647 0.96 10 13 0.73 41 5.2 6.2 2 23 666 687 665 687 0.96 11 13 0.054 3.1 8.7 1.3 1 23 693 715 693 715 0.91 12 13 0.23 13 6.8 1.8 1 22 721 742 721 745 0.90 13 13 0.0001 0.0059 17.3 0.1 2 23 776 797 775 797 0.97
Sequence Information
- Coding Sequence
- ATGGAGAGCCAAACTCAAATAAAGGAAGAGGTCTCAGAAATGGATGAGGATATAACTGACAACAATATTGTTGTTAAAGAAGAATTTTCTGAAACGTCTGAAGATGACAATGTACCAATGCCATTACCAATGAAGGAAGAATTAAATACAGAAGATAATTCTGAAGTTCCGGAGAACTTAGATAATTTAAAAACAGAAGTAAATGTGGGTTGTATGTCAATAAAAGAAGAATTGGAGGATGGAGAGCATATAACGGAAGATGTAGTTATTAAGTATGAAGCTGAGGAGTCTGAGCCTCGCGTACCATCCTGGGTATCAGTCGACTTTCCTTTGCGTTTTCAACGTAGTGGAAAGTCTGCAGTTTGTGAGCATCAACAGGACGGCGCCAATCACTACATCCGTTTCGACAAACCGAAGATCCTCGCAAAGGAAAGTCGACTGATACCCAGGATGGTACGCGAGGCTATTGAGATTAAAAAGCATCCTAATTTCAATAGAGAAGGTGGTTGGCGATTATCTAACACCTGGGACCCCATAATTCACAAACTCAAGTCCCAAGTCCAGCAAACTGCCAAACCAGATGACACCTACATACATCAACATGAACCTGATAGTATAGAGATTAAAATCGAAGCTGAACTAGAAAGGATAGCCGATGACATCATGCCCAAGTTAGTGCATGTGGAATCATTAAATGACGAATATAGTGAACAGATACTCCCAAACGATTATGATGGTGATAACGAACAGAATTACCTATTAAATTCAATAACTAGCAATGCATTAACTCTCGAAGAACAAGTCAATAGTCAAAATATAAAGCAAATAGAATTGGTACAATGCACTAAATGTTCACGCTTTATAGGTAAACATAATATAAAGAGGCATATGAAAGTACACACTGGCATTGAACGACGAGCTATGGGAATAATGAAAGCACTAAAAACTAAAGCTCTAAGAAAAACCCAACAACAAGAAAAAGGAAGCCCATACGTAAGTGGTAGTGGCAGTTTTAAATGTTCAAAGTGCCGTAAACAATATTACATGAAAAAAAGCCTGTTGAGACATCAAAGACTTTGTAATAAAGAATTGGCAGATGGCAGTGAGTACCATTGCTCGAACTGCGGAGAATTCTTCACAGTTAAACGGTCTTACTTAAGACATCAGAACAAATGTGATGCACATGTACCAAAAAATGATATTACCAAGGTTGAAATTCAAAAAGATGTTGGCGAGTACCTTTGTTCTTGTGGTAAAGCATTTCATAGGCGGAGCAGAATGGAGACATGCCTCAGATCACATACAGAAAGTATACAACGAAGATACGAAGGAATGTTCCCATGTCCAACTTGTCCAAAACAATTTATGACTAAAAACCAATTAGCTGCACACAGAAAACTACATGCTAGAAAAAGGTTCCCATGTAAATTTTGCCCCCTAGATTTTCATACACCAAAAGAATTGTTCAAACACTTAAGGAAACACCAAAAAGTTCAGCAGATAGAGTATGAGGTTGTGTCGGCGGTTGTGAATGGCAAACAAGAATTAAAATGTTTTATGTGTAGCAAAACTTGTAAGGAACTTTCTGAATTAAAATTACATGTATTAGGTGATCATAGAGAACCCTACACATGCCCCAAATGTAAAGAAAGCTTTCGTAACATAATTGATTTTGCTTCACATACGAAAAACTCGCACCCCGAAGTCGAAGGACAATCTGTTTTGAGTGTTATTGAAGCTTTCTCTAAATTAGCTCGATGTTGGAAGTGTGAAGAATGTGGGCTACAATTCGATCAGCCCAAAAAACTGGCTCTTCACCAAGTTGAACAGCATTCTAAGAATGGAAAAACAGATATAGTAGTACCAGAATATTTGTGCCCATATTGCAGTAGAGTGTTTTTGACTGCGAAACGATTGGCAACCCATCTCCGAATGATACACAACTTAGAAGAAAATACTGAAAAATTAAATAAGGAGGAAGTAAATACAACTTTAATGTGCTTGCATTGTAGGAAAGTTTGTAAAGACGAAAATGCACTAACTTGTCATATGAGATTACATTCACCTGAGCGTAAATACGTTTGTAAGTTCTGTGATTTTCGGTTTGCTACAAGCGAGAAGCGGAAAGAACATTCTGTTATACACACAGGTGATATGAAATATGTTTGTTTTATATGCGAGTATGTGTGTACTTCCGAGAATAGGCTAAAAATGCATAAAGAATCAGGTAAACACATTAGTATAAAACAATCGTTGTTAGACGGTGTATCTTATCCTGAAGATAGTAAAGCGGTCGCGCAAACAAGTTCGGCTGATGAAGCAAGCGTATGTAACGTGTGCGGAGAATCCTTTTCCAGTGAGTCTGAAATGTTGGAACACAAAAAAGTGCATCCCTTTATAGAATTTCCTAATGAAGATCAACCAACGATATTTTTCAAATGA
- Protein Sequence
- MESQTQIKEEVSEMDEDITDNNIVVKEEFSETSEDDNVPMPLPMKEELNTEDNSEVPENLDNLKTEVNVGCMSIKEELEDGEHITEDVVIKYEAEESEPRVPSWVSVDFPLRFQRSGKSAVCEHQQDGANHYIRFDKPKILAKESRLIPRMVREAIEIKKHPNFNREGGWRLSNTWDPIIHKLKSQVQQTAKPDDTYIHQHEPDSIEIKIEAELERIADDIMPKLVHVESLNDEYSEQILPNDYDGDNEQNYLLNSITSNALTLEEQVNSQNIKQIELVQCTKCSRFIGKHNIKRHMKVHTGIERRAMGIMKALKTKALRKTQQQEKGSPYVSGSGSFKCSKCRKQYYMKKSLLRHQRLCNKELADGSEYHCSNCGEFFTVKRSYLRHQNKCDAHVPKNDITKVEIQKDVGEYLCSCGKAFHRRSRMETCLRSHTESIQRRYEGMFPCPTCPKQFMTKNQLAAHRKLHARKRFPCKFCPLDFHTPKELFKHLRKHQKVQQIEYEVVSAVVNGKQELKCFMCSKTCKELSELKLHVLGDHREPYTCPKCKESFRNIIDFASHTKNSHPEVEGQSVLSVIEAFSKLARCWKCEECGLQFDQPKKLALHQVEQHSKNGKTDIVVPEYLCPYCSRVFLTAKRLATHLRMIHNLEENTEKLNKEEVNTTLMCLHCRKVCKDENALTCHMRLHSPERKYVCKFCDFRFATSEKRKEHSVIHTGDMKYVCFICEYVCTSENRLKMHKESGKHISIKQSLLDGVSYPEDSKAVAQTSSADEASVCNVCGESFSSESEMLEHKKVHPFIEFPNEDQPTIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -