Ttri008734.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992314.1:2051423-2061704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.014 0.76 10.6 1.8 1 23 321 343 321 343 0.99 2 11 0.13 7.1 7.6 5.5 2 23 351 373 351 373 0.93 3 11 6.3e-05 0.0035 18.0 0.2 1 23 404 427 404 427 0.95 4 11 0.0053 0.3 11.9 0.7 2 23 432 454 431 454 0.91 5 11 0.17 9.6 7.2 0.2 3 20 466 483 465 485 0.95 6 11 7.8e-06 0.00044 20.8 0.7 3 23 495 515 495 515 0.99 7 11 0.12 7 7.6 0.1 3 23 531 552 530 552 0.94 8 11 0.0033 0.18 12.5 8.9 2 23 570 591 569 591 0.96 9 11 3.9e-05 0.0022 18.6 0.0 1 23 597 619 597 619 0.98 10 11 0.00016 0.0091 16.7 3.8 1 23 628 650 628 650 0.95 11 11 4.8e-05 0.0027 18.3 3.8 1 23 656 679 656 679 0.96
Sequence Information
- Coding Sequence
- ATGGACTCGTACGTGGCTTGTAGAGTATGTCTTGTGACGGAGAAACGGTTTACGACTTTAGATACTGACCCTATAGTCGGTGATGCGTACTTAAATCTTGTAGGACTGGTGGTCTATAATCCACTTCAAACTGTATGTTATGAATGCTCAGCTTTATTACGCAGATGTTCGGAATTAAAAGAAAAATGTATGAGAACAAATACTATTTTGATGAATATATTAAAAAGGCATGAATTGATATCTTACTCCACAATAAAAGAGGTGGATCGTAAAAATCTTCAATTAGAATCGAATCTTTCATTAGTTGTTTTACATGAAACTGATATACCAAGTGAAGTTATTGGTGAACATGATACTACAGTTAAAGTGGAAGTAAATGAGGCAATCAAAGAAGAAACTCATGCAGAGACAAACTTTGAAAATCTCTATGCAAGTTCAGATGATTGTCTGTTAAAAGATTATATCAATGAAAAAGTTAAGGCAAAGAAGAAAAGTAAAAAGAAAAAGAATATAAAAAATAATAAAACAGATTTAATTATTAATGACAGCAATAATAAATTGGATGAAAAAAATAATGGTGAATTAAATGGATTAACAGAAATAGTTAGACTCAAAGAAGTGGAGGTAGTTAATTTAGAACCGTTACAAGACTTAGAGGATTTACAAGATGAAAAGGATTGGTCAGAGGAAAGTGTTTCGAGTTCAGAGGATTTAGGATTAGATAAACTATTTAAAGAGAAGAATAAAATGAAATATAAAAAGAAACGTAAAAAACAAAATAAGGAAGAAAATGTGCAAAATAATGATGAAATTAATGGGAAGAATAATAGAAAAAATAATGGACCAAAATTTGATTTTGATTATTTCACAGAGTATGCTGAAGTTATTGATTTAACAGCAGAAATGGCAAAGAAGGAAGTTTTATCAAGAAAAGAGACAAGTAATTATATAAATTGTCGTTTTAAATGTAATCTATGTTTTAGAGGGTTTGAAGTTGAAAATACTTATGATAATCACATGAAAAAACATAGTAGTGAATTTGGTGAGAATGAGTGTGAATTTTGTCATTTGCGATTTCCTGATCATAAAAGTCTATGGAAGCATGTTTATTCCTGTCATAAGAGGAAATTTTCATGCAAATTATGCCCGTATACATGCTTTTGCTCAAGTCAAGCAAGACTGCACGTAAAACTGCATGAAGGGAAGAAGTATTTGTGTAATATATGTGGAGAGACATTCAGCATGCCAAACAGCTTAGCAATGCATAAGAGGATCAAGCATGCAACCGAATGTGTCTGTGAGTTGTGTGGGAGTACATTTGCTACATCACGGGGCCTACGATCGCATAATATGCTCATACATAGGCAGGAACAAAATGAGAAGTGTGGTCCATTCTGTTCTGAATGTAATATCCATTTTGCTAATGATACTGCTTGGAAAAGACATTTGGTATTATCGTCCAAGCATAAAGTTAGTAATGGATGTGAATTTTGTGGGGAAACTTTTAATGACAGTTTCGAGTTAAAAAAACATTTACGTGTACATGCTAGGAAGCAAGCAAGTCGAGCAGATATCAAACTACCCTCTGCTTGCCCATTGTGTAACCGATGGCTGACAAGTAAGTCTGATTATAAGGAGCATATCATATTGGCGCATCCAACGTCGCCGGCTGCCAGGAAACTACAAAATGGCGACGCAGCACAATGTGTTTGTGAGCATTGCGGAAAGATGTTCAAGAAGCAGTGTTTCCTCGTGTACCACCAGCGCAAGCACACGGGCGAGCGGCCATACAAGTGTGAGGATTGCGGCAAGGAGTACGCGTTCCCTGGTGCACTGTCTGCGCACAGAGCGAGCCACAGAGCGCCAAGTGCCAAGGCCACGCACGACTGCCATTTGTGTAACAAAGGATACAAGACGAGGAGTGCTCTGCTTAAGCATTTAAAGGCCCACCTAGGCATCCGACCTCACAAATGCAAAATCTGCGACAAGTCGTTTCCTAATCGTTGCGACGTGCGCGTTCACATGCAATATGTGCATTACAAAGTGCCTTGGCCTAAAAGAGATAGAAATAAAAGAAATAAGAAAAATAATGATGATGATTGTGATCAACCGTTGTGCTAA
- Protein Sequence
- MDSYVACRVCLVTEKRFTTLDTDPIVGDAYLNLVGLVVYNPLQTVCYECSALLRRCSELKEKCMRTNTILMNILKRHELISYSTIKEVDRKNLQLESNLSLVVLHETDIPSEVIGEHDTTVKVEVNEAIKEETHAETNFENLYASSDDCLLKDYINEKVKAKKKSKKKKNIKNNKTDLIINDSNNKLDEKNNGELNGLTEIVRLKEVEVVNLEPLQDLEDLQDEKDWSEESVSSSEDLGLDKLFKEKNKMKYKKKRKKQNKEENVQNNDEINGKNNRKNNGPKFDFDYFTEYAEVIDLTAEMAKKEVLSRKETSNYINCRFKCNLCFRGFEVENTYDNHMKKHSSEFGENECEFCHLRFPDHKSLWKHVYSCHKRKFSCKLCPYTCFCSSQARLHVKLHEGKKYLCNICGETFSMPNSLAMHKRIKHATECVCELCGSTFATSRGLRSHNMLIHRQEQNEKCGPFCSECNIHFANDTAWKRHLVLSSKHKVSNGCEFCGETFNDSFELKKHLRVHARKQASRADIKLPSACPLCNRWLTSKSDYKEHIILAHPTSPAARKLQNGDAAQCVCEHCGKMFKKQCFLVYHQRKHTGERPYKCEDCGKEYAFPGALSAHRASHRAPSAKATHDCHLCNKGYKTRSALLKHLKAHLGIRPHKCKICDKSFPNRCDVRVHMQYVHYKVPWPKRDRNKRNKKNNDDDCDQPLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -