Basic Information

Insect: Tinea trinotella
Gene Symbol: -
Assembly: GCA_905220615.1
Location: HG992332.1:678100-683941[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0023 0.13 13.0 0.6 1 23 324 346 324 346 0.97

2 12 7.9e-06 0.00045 20.8 3.3 1 23 379 401 379 401 0.98

3 12 0.026 1.4 9.7 1.7 1 23 407 429 407 429 0.99

4 12 0.00034 0.019 15.7 1.0 1 23 435 457 435 457 0.98

5 12 1.1 62 4.6 2.5 1 20 463 482 463 484 0.95

6 12 0.003 0.17 12.7 3.8 1 23 496 518 496 518 0.98

7 12 0.014 0.77 10.6 9.2 1 23 524 546 524 546 0.99

8 12 0.0014 0.081 13.7 5.2 1 23 552 574 552 574 0.98

9 12 0.0001 0.0056 17.3 1.1 1 23 606 628 606 628 0.99

10 12 0.00024 0.013 16.1 1.6 1 23 634 656 634 656 0.99

11 12 9.9e-05 0.0056 17.3 1.5 1 23 662 684 662 684 0.99

12 12 0.0011 0.064 14.0 0.2 1 23 690 712 690 712 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0023	0.13	13.0	0.6	1	23	324	346	324	346	0.97
2	12	7.9e-06	0.00045	20.8	3.3	1	23	379	401	379	401	0.98
3	12	0.026	1.4	9.7	1.7	1	23	407	429	407	429	0.99
4	12	0.00034	0.019	15.7	1.0	1	23	435	457	435	457	0.98
5	12	1.1	62	4.6	2.5	1	20	463	482	463	484	0.95
6	12	0.003	0.17	12.7	3.8	1	23	496	518	496	518	0.98
7	12	0.014	0.77	10.6	9.2	1	23	524	546	524	546	0.99
8	12	0.0014	0.081	13.7	5.2	1	23	552	574	552	574	0.98
9	12	0.0001	0.0056	17.3	1.1	1	23	606	628	606	628	0.99
10	12	0.00024	0.013	16.1	1.6	1	23	634	656	634	656	0.99
11	12	9.9e-05	0.0056	17.3	1.5	1	23	662	684	662	684	0.99
12	12	0.0011	0.064	14.0	0.2	1	23	690	712	690	712	0.99

Sequence Information

Coding Sequence: ATGGAAGATATTTGTGCAACATGTTTAGCAAATGATCGGAGTTTAAAAAAATTGAATAAGGCCGGAGTTTTTGGTATATTAAAACGTTTGATGGAGCAAGCTGGATATAATAAATTAAGAGGAACTAATAAAGTATGCTGGGAATGTATTGCACAATTAAAAAATGTTAGAAAATTCCAAACTAAAGCATTGGATAGTTTACAAAGACTGCAAGAATATTCTAGTAAAAGTGAGATCCATAACGAGTACACAAACACCTCACTAACAACATTAGGCATACAAAAATTAAGAAATTTGAACATGCATGATGATTTAAGCGACAGTGATGATGAATCTTATGATGAAATTCCAGAATTAGATGATGATGATGCAAATGCTTCTAAAGCACCTGTTAAACTTGAAGAATATGGTGATGTTATGTTTATTGAGAATGATCTAGGAAATCCCGTAAATTCTGACCCTTTTAGTACTTTCAAATCGGAACCCGCATTGGATGACAAGTGTCAAGATGAAATTAATAATATTAAAAATGATGTAGTGGAACAGTTTGATGATAATCTTCAGTTACAGGTGTTAGATTTCGCACATATAAAACAAGATACAAGTGTAAATGAAAATGATAAAAGCATAAACGATGATACACTCAATGCTGACTTGGCATCTCTGACGCCAATAATAAGAGAAGCAGCTGCAGAACCAACATGGCGTCCGGAAATGTCAACAAATGAACAACTACCCTCATGTAGAAATTTAGAATTGAACTCAACTCGTGCTTTCATTAAAACGGATGGCGAAAGGACCAACAATGAAGTAATTGAAGAATCCCTGTTGAAGATAAATGAAAATTTAGTTTATACAACTTCGGAAGTTGATACAAAAATAGAAACATGTAGATCTGTTAAATTACCACCTAAGGAAACAGTAATATCCACGAAAGCAGGCTTTAAAAAACAATTTAATGATAATAAATTTATATGTGATATATGCAAAAGAGAATATAATAAAAAGATAAAATTAGTACAACATATAGATAAACATAATACAAATTCGATGATTAATAAAAAAACATTTGATTCACATGCGGGCGAAAAAAATGTAAAAGCCCGAATTCATGTAGAAACTACGAAAAAAACATTCAATTGCCATTGGTGTAAATATGTTTCAATACGGAAATCTGACTTGAAAAGACACATTCGTACACATTCGGATGAAAAACCATTCAAATGTGATTTATGTGAACATAGAGTAAAATGGAAACGAGACTTAGTAAGCCACATTCGTACACATACGGGTGAAAAACCATTTGAATGTTATATATGTGACTATAAAGCAAACCAAAAAAATTTGCTAACGTATCACATTCGTACACACACAGGTGAAAAACCATTTAAATGTGATTCGTGTGAATTTAGGACAATGTACAAAAGGTCCTTAATAAGACACACATGCGGAAACACGACACACAGACACACGGGTGACAAACTATTTAAATGTAATTCATGTGAATTTAGGACAAATCACAAAGAGTCTCTAACAAGGCATGCACGTATACACACGGGTGAAAAACCATTTAAATGTCATTTATGTGTATATAGGACAACTCAGAAATGTCACCTAACAATCCACATTCGTAAACACACGAGCGAAACACCATTTAAATGTCATTTATGTGAATATAAGACAAATCAGAAATTTTACCTAACAAGACACTTACAGGTACATACACGTGAAAATGAATATATTTTACGTAAATATGGGGTTAAACGACAAAGTCACTCACGAAGCCACGTTCGTATACACTCGGGTGAAAAACCATTTGAATGTCATATATGTGAATTTGGGACAAAGTACAAAGGTGACTTAGTAAATCACATTCGTACACACACGGGCGAAAAACGATTTCAATGTCATTTATGTGAATATAAGGCAATACGCAGAGGTTACCTAATAAACCACATTCGTACACACACGGGGGAAAAACCATTTGAATGTCATATATGTGAATATAGGGCGAAATACAAAGCGACCTTGATAAACCACATCCGTACGCACACGGGCGAAAAACCATTTAAATGTGATTTGTGTGAATATAGGGCAATACAGAAAGGTAGTTTATTAAATCACATTCTCACACACTCGAAGGAGTCCAACGAACGTTAA
Protein Sequence: MEDICATCLANDRSLKKLNKAGVFGILKRLMEQAGYNKLRGTNKVCWECIAQLKNVRKFQTKALDSLQRLQEYSSKSEIHNEYTNTSLTTLGIQKLRNLNMHDDLSDSDDESYDEIPELDDDDANASKAPVKLEEYGDVMFIENDLGNPVNSDPFSTFKSEPALDDKCQDEINNIKNDVVEQFDDNLQLQVLDFAHIKQDTSVNENDKSINDDTLNADLASLTPIIREAAAEPTWRPEMSTNEQLPSCRNLELNSTRAFIKTDGERTNNEVIEESLLKINENLVYTTSEVDTKIETCRSVKLPPKETVISTKAGFKKQFNDNKFICDICKREYNKKIKLVQHIDKHNTNSMINKKTFDSHAGEKNVKARIHVETTKKTFNCHWCKYVSIRKSDLKRHIRTHSDEKPFKCDLCEHRVKWKRDLVSHIRTHTGEKPFECYICDYKANQKNLLTYHIRTHTGEKPFKCDSCEFRTMYKRSLIRHTCGNTTHRHTGDKLFKCNSCEFRTNHKESLTRHARIHTGEKPFKCHLCVYRTTQKCHLTIHIRKHTSETPFKCHLCEYKTNQKFYLTRHLQVHTRENEYILRKYGVKRQSHSRSHVRIHSGEKPFECHICEFGTKYKGDLVNHIRTHTGEKRFQCHLCEYKAIRRGYLINHIRTHTGEKPFECHICEYRAKYKATLINHIRTHTGEKPFKCDLCEYRAIQKGSLLNHILTHSKESNER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -