Ttri011577.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992334.1:3704665-3706692[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0014 0.076 13.8 1.5 2 21 121 140 120 141 0.94 2 18 0.0071 0.4 11.5 0.7 2 20 172 190 171 193 0.91 3 18 0.31 18 6.3 3.8 1 23 197 219 197 219 0.97 4 18 0.039 2.2 9.2 0.9 5 20 225 240 224 241 0.94 5 18 0.00099 0.056 14.2 0.1 1 20 252 271 252 272 0.96 6 18 0.0023 0.13 13.0 1.0 1 23 303 325 303 325 0.98 7 18 0.00052 0.029 15.1 0.9 1 23 330 353 330 353 0.97 8 18 0.3 17 6.4 5.2 2 20 358 376 357 378 0.92 9 18 0.00091 0.051 14.3 0.7 1 21 387 407 387 408 0.96 10 18 0.0048 0.27 12.0 0.5 2 23 413 433 413 433 0.97 11 18 1e-05 0.00058 20.4 1.0 1 23 438 460 438 460 0.98 12 18 0.04 2.2 9.1 4.0 1 19 465 483 465 488 0.91 13 18 0.53 30 5.6 3.1 5 21 494 510 493 511 0.92 14 18 0.00079 0.044 14.5 2.2 1 23 522 545 522 545 0.92 15 18 3.9e-05 0.0022 18.6 6.6 1 23 552 574 552 574 0.99 16 18 0.088 5 8.0 1.1 1 23 580 602 580 602 0.96 17 18 0.82 46 5.0 0.7 1 23 608 631 608 631 0.90 18 18 3.1 1.8e+02 3.2 4.0 7 23 645 662 638 662 0.82
Sequence Information
- Coding Sequence
- ATGGAGGAATCACCAACGCTGCCCGATGGTATCTGCAACATTTGCGCTGTCCACGCATTAAGCACAAAAAGATTCATCGACACGTGCACGGAATCGGCTCAGAAATGGTCAAAAATAACCAATTACTTACTAGATTTAGAACCAATGAATGGTAAGAAAGGTTACTACATCGTTATAAATAAAACTGGTGAGCCTACGTTGGTTACTGATAACCTACCAAGTGAAAGTACGACGAATAAAGCACTCAAAAGAATTGTAACTAGAATAAAACAAAAAGCTAAAAGCAACAAGCGAGTAGAGCTTTACAGAACCATCAGAAAAAATAAGGTGATGAAACTTAAACGAAAGTGGGTTGCCTTGTGTTGTCCAGATTGCAAAACAAGTTATGGCTCAAGAAAATCTTTAAATAGACATCTAAAAGATAGCAGGAAGAGGTCCTGTATTGAATGTCACACTGTTGTTGAATACAGCCAGTACAAACTGCATTTGAAGACACACAACCTGAAGATTATTAGTTGTCACATTTGTTCTGAAATATTTGATAAGCAAACTACTTTAGAGAATCATTTGCCACGCCATGTTGGAAAACACGTGTGTGAGCGATGTAAGCATGCGTTTCCAAGTATGCGATCGTACAAATATCATGTGCTTAGTCATAAAACAAATATATGTGGCTGTGGAAAAGTATTTGAGAATCAAAAATGCTTCTCGCGTCATCAAGTGTGGTGTCAGGGATCGATTGAAGAAAAAGGATTTCAATGTCCAGATTGCGATGTTATATTTAAAAACGTTATTGAGTTAAACACTCATCTATTTGACACGGCTATAAAGTACTGTGTGCAATGTAAAGATTTCGTACCACGAATGAATTATGAACAACATTCCCAGTATCATGAATTGACTAACTTTAATTGCGATGAATGTAATTTAGAATTTGATAATGTGAAGTTTTATGAAAAACATCTCAGGTCTCATTATGTTCAAGAATTTACTTGCGGCTATTGTAAAGCTCCTTTTAAAACTATAGCAGATCTAAAGATTCACAAAAAAAAATATCATCCATATAAACAAACTTGTTCTGATTGTAAAAGGGTCTATTGTAATAGGAAGTGCTTTGCCAATCATACTGAGAAATGTGACGCAAAGACTGAAGAACTATTTACATGTCCAAATTGTGACATAAAATTTATATCATTTTATTATCTATTTCTACATTTAAGACAATCACAAACGCGAGTCTGTTGGATATGTCGAAAAACGGTTCAGTTAGAAAATCTGAATAATCATTTAAAAACTCATAAACGCAAGTTCTATGAATGTAAAGTTTGTCCCGAGTGTTTTAATTCGGCTGAGGAATTTAAAGCGCATGTAAAAAGACATAACGTAGGCAAGTTCGTTTGTAATCAGTGTTTATACAGCTTCAAAAACTCGAAATCCCTATCAGTCCACTGCACTATGAAACATAAAATTCTAATTTGCAAATGCAATAAACGTTTCGACAATAGCAGATGCTACAAGAATCACATATCGAGATGTAGCCAGTATGAGGAATGTAAACCAGATTTCATTTGCGATTACTGCAAGAGATCTTTCAGAGATAAAAATTTAATATCCCACCACATTATAAATCAACATACACGCGATAGGCGTAATTATCAATGCGATAAATGCGGTAAAAGATTCACGAACAAATTCCATATGGTAGAACATCACAATACACACGTCAAAGTTTTAAAATATAGCTGCTCTATCTGCGACACGAAGATGTCGACCCTAAAAGGTTACCAGCAACATAAATTACTTCACACGGGTGAGAAGCCATACCCGTGCCCTTATTGTAATTTACGAATGATGACAGCAACGCAGAAAGTAAGACATCTATATCGTAAACATTCAGACAAAGTTGAGTTTCACCGATGCATTTTTTGCCCTCATAAATATTATTCGCAGAAAAGAAATCTAGATAAACATATGAATGATAAACATAGAAAAAAAAAGGACGGACCAGAAGAGCCGCTCACTAAATAA
- Protein Sequence
- MEESPTLPDGICNICAVHALSTKRFIDTCTESAQKWSKITNYLLDLEPMNGKKGYYIVINKTGEPTLVTDNLPSESTTNKALKRIVTRIKQKAKSNKRVELYRTIRKNKVMKLKRKWVALCCPDCKTSYGSRKSLNRHLKDSRKRSCIECHTVVEYSQYKLHLKTHNLKIISCHICSEIFDKQTTLENHLPRHVGKHVCERCKHAFPSMRSYKYHVLSHKTNICGCGKVFENQKCFSRHQVWCQGSIEEKGFQCPDCDVIFKNVIELNTHLFDTAIKYCVQCKDFVPRMNYEQHSQYHELTNFNCDECNLEFDNVKFYEKHLRSHYVQEFTCGYCKAPFKTIADLKIHKKKYHPYKQTCSDCKRVYCNRKCFANHTEKCDAKTEELFTCPNCDIKFISFYYLFLHLRQSQTRVCWICRKTVQLENLNNHLKTHKRKFYECKVCPECFNSAEEFKAHVKRHNVGKFVCNQCLYSFKNSKSLSVHCTMKHKILICKCNKRFDNSRCYKNHISRCSQYEECKPDFICDYCKRSFRDKNLISHHIINQHTRDRRNYQCDKCGKRFTNKFHMVEHHNTHVKVLKYSCSICDTKMSTLKGYQQHKLLHTGEKPYPCPYCNLRMMTATQKVRHLYRKHSDKVEFHRCIFCPHKYYSQKRNLDKHMNDKHRKKKDGPEEPLTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -