Basic Information

Insect: Tinea trinotella
Gene Symbol: -
Assembly: GCA_905220615.1
Location: HG992332.1:3937922-3950263[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0051 0.29 11.9 3.2 1 23 281 303 281 303 0.98

2 10 0.19 11 7.0 0.8 1 23 310 332 310 332 0.87

3 10 1.6 87 4.1 0.2 1 20 336 354 336 356 0.89

4 10 3.8e-06 0.00021 21.8 1.5 2 23 366 388 365 388 0.96

5 10 2e-06 0.00011 22.7 0.7 1 23 397 419 397 419 0.98

6 10 1.1e-05 0.00064 20.3 2.2 1 23 424 446 424 446 0.99

7 10 0.00076 0.043 14.5 1.4 1 21 454 474 454 475 0.94

8 10 1.7e-05 0.00095 19.8 0.2 1 23 484 507 484 507 0.98

9 10 0.011 0.59 11.0 4.4 1 23 513 535 513 535 0.95

10 10 1.7e-05 0.00096 19.7 1.3 1 21 544 564 544 565 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0051	0.29	11.9	3.2	1	23	281	303	281	303	0.98
2	10	0.19	11	7.0	0.8	1	23	310	332	310	332	0.87
3	10	1.6	87	4.1	0.2	1	20	336	354	336	356	0.89
4	10	3.8e-06	0.00021	21.8	1.5	2	23	366	388	365	388	0.96
5	10	2e-06	0.00011	22.7	0.7	1	23	397	419	397	419	0.98
6	10	1.1e-05	0.00064	20.3	2.2	1	23	424	446	424	446	0.99
7	10	0.00076	0.043	14.5	1.4	1	21	454	474	454	475	0.94
8	10	1.7e-05	0.00095	19.8	0.2	1	23	484	507	484	507	0.98
9	10	0.011	0.59	11.0	4.4	1	23	513	535	513	535	0.95
10	10	1.7e-05	0.00096	19.7	1.3	1	21	544	564	544	565	0.95

Sequence Information

Coding Sequence: ATGGTCAATAATCAATGTTATGTGTGTAACAATATTGTTGCTACCGAAACCAATGTAGACGTACGTAATAAATACTACAATTTAATTGGAAGGAAGTTATATTCTGGTACAAATTTATGTTACATTTGCTCACATTTGACAAAAAAGCTATGGTCATTCCGTAATATATGTTTGAATAAAGATGACGATCTATTAGAACATGGATGTGAAGAAGAACTTAATTGGTCACTGCTATTCAGATTAACAAAAGACGCAGATAACCCACATAACTTGCAAATATCCCTGTTAAACCATATAATCATATGTCCAGAAGATGTGTGTCAAAGTGTCGAATCGACCCATTTGAGGTTCGATGCTCTTCACAATGATATTATACATGAATTGGTCAATGATGTGGTTGGAGCTGGTGACAATGGTGTCAGGGAACTTGAGTTGGAGCAGTTTGATAGTTATAGTAACTATGACCAAATAGCAGAATACAGAGATGAAGACAACCAAGCAAAAGAAAGCAATATAGGGAATATACAGAAGAATGACAATACAAATTTTTACACTCGAAATTCTACTGAACCAATAAGTGATAATATATCTATGATAGAAAACTGTGGAGCTGATGATGTGTCCGTATCATCAGATGATGAGCAAAATAATGATGAAAATGATGATTGCGATGAGGAGTTGATGGAATGTAATGCCCCAAAAACCGAAGAAGAGTTGCTTTTAGAAGAGATAGTCAGACGCCATGAAAACAAGCATTTCACTAAAATACAACTGTCATTTGAGGAACAAAAGAGTGGGATAGATGTATTGAGGAAGAGTAAGAAATATATAGAAGCAGAATTTAAATGTCACAATTGCGGCCTAGGATTTTTATACAAAGACAGCTATAGGACTCATATGGTCAGGCATGAAGAGTCAAACGGCCAGTACACTTGTACAGTATGTACTCTACGCTTCGCAACACCGAATGCCCATCGCATGCATGTGACTTTACATGCAGTTAAGTATATCTGTTCTGTGTGCGATAGCGTACTATCAAGTTCAAATAGAAAGAGGCATAAGCAGGAGTGTTGGAAGGAAGCCATTGAGCCTGTTTCGTGTCATCTTTGCGGGAAGATATTTAATGATAATAGTGGTCTTCAGCAGCATTTAAAAAGGTTCCACTCCATGAAAAACAAGAAACATAATTATACATGTAATATATGTGGAAAGAAATATACATATCAAACAGGCTTAAGGACACATTTGATTGTCCACACAGACAGAGTGTTCAAATGCCAGCAATGTGACAGAACATATACGAATCCGAACACACTGGCGCAACACAAGAAAACACACACAAATACGCAAACGCAAAAGTTCTACTGCACAATGTGCGGCACATTTTATGCGTCGAAGAAATTGTTGAGGAAACATGAAAAGTATAGTTCTGCACATCAAACCTTTAGCTACGAATGTCCAGCCTGTACGAGAACGTATGCGACGCAGAAATCATTGCAAATACATATAAACACAATACATTCGGCTTTGAAGCCTTATCAATGCGGATTATGTCCTGCTAGATATAGTACAAAGAAATCCCTAAATCATCATTGCAAAATTCATACTGACTATGTTCGGGGGAAGAAATTTATTTGCGACATGTGCGGTAAATGCTATAGGGGCAAGAGTAAATTAACGCGTCACGTAAGAGAAGTCTGCGAAAGGAATAAGTCTGAAAACATGTACCACATTTTCAGTGAAGATTTAGTTACAATTTGA
Protein Sequence: MVNNQCYVCNNIVATETNVDVRNKYYNLIGRKLYSGTNLCYICSHLTKKLWSFRNICLNKDDDLLEHGCEEELNWSLLFRLTKDADNPHNLQISLLNHIIICPEDVCQSVESTHLRFDALHNDIIHELVNDVVGAGDNGVRELELEQFDSYSNYDQIAEYRDEDNQAKESNIGNIQKNDNTNFYTRNSTEPISDNISMIENCGADDVSVSSDDEQNNDENDDCDEELMECNAPKTEEELLLEEIVRRHENKHFTKIQLSFEEQKSGIDVLRKSKKYIEAEFKCHNCGLGFLYKDSYRTHMVRHEESNGQYTCTVCTLRFATPNAHRMHVTLHAVKYICSVCDSVLSSSNRKRHKQECWKEAIEPVSCHLCGKIFNDNSGLQQHLKRFHSMKNKKHNYTCNICGKKYTYQTGLRTHLIVHTDRVFKCQQCDRTYTNPNTLAQHKKTHTNTQTQKFYCTMCGTFYASKKLLRKHEKYSSAHQTFSYECPACTRTYATQKSLQIHINTIHSALKPYQCGLCPARYSTKKSLNHHCKIHTDYVRGKKFICDMCGKCYRGKSKLTRHVREVCERNKSENMYHIFSEDLVTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -