Basic Information

Insect: Tinea trinotella
Gene Symbol: Gzf1
Assembly: GCA_905220615.1
Location: HG992332.1:524325-540974[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.18 10 7.1 3.1 1 23 254 276 254 277 0.96

2 11 0.23 13 6.8 1.4 1 23 283 306 283 306 0.89

3 11 0.92 52 4.8 5.1 1 23 310 332 310 332 0.97

4 11 3.4e-05 0.0019 18.8 4.0 1 23 337 359 337 360 0.96

5 11 0.061 3.5 8.5 0.1 1 23 364 387 364 387 0.91

6 11 0.00069 0.039 14.7 0.1 2 22 399 419 398 422 0.88

7 11 0.00018 0.01 16.5 0.5 3 23 428 448 427 448 0.97

8 11 2.9e-05 0.0016 19.0 0.2 2 23 489 510 488 510 0.97

9 11 0.00012 0.0065 17.1 1.2 1 23 516 538 516 538 0.99

10 11 5e-07 2.8e-05 24.6 1.1 1 23 544 566 544 566 0.98

11 11 2.5e-05 0.0014 19.2 4.7 1 23 572 595 572 595 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.18	10	7.1	3.1	1	23	254	276	254	277	0.96
2	11	0.23	13	6.8	1.4	1	23	283	306	283	306	0.89
3	11	0.92	52	4.8	5.1	1	23	310	332	310	332	0.97
4	11	3.4e-05	0.0019	18.8	4.0	1	23	337	359	337	360	0.96
5	11	0.061	3.5	8.5	0.1	1	23	364	387	364	387	0.91
6	11	0.00069	0.039	14.7	0.1	2	22	399	419	398	422	0.88
7	11	0.00018	0.01	16.5	0.5	3	23	428	448	427	448	0.97
8	11	2.9e-05	0.0016	19.0	0.2	2	23	489	510	488	510	0.97
9	11	0.00012	0.0065	17.1	1.2	1	23	516	538	516	538	0.99
10	11	5e-07	2.8e-05	24.6	1.1	1	23	544	566	544	566	0.98
11	11	2.5e-05	0.0014	19.2	4.7	1	23	572	595	572	595	0.98

Sequence Information

Coding Sequence: ATGGGGGAATTGTATGCATGCAGACTGTGTTTTGCAACTGATATAAAATTATGTAAAATAAAACAAGGAACTGTGGTGGAAAACATTAAAAAATTACTCGGCTATGATATATTACAAAATAATAAATTACCCAAGTATTTATGTTACCTGTGTTTGAATTTAATAAAAAAATACATAACATTTGTTGACAAATGTAAATTGTCACTTTATCTCTTCAATGAGTATATCCAGGACCAATGCAAAATAACAACGAAATTGTGTAAAAACATCAATAACAAAGTGAATTATATGAAATGTGTAAAAAGTGAAACTATAATATTAGACACACTTGCTGCTGTTGATGTTAAACAAGAGAATATTGAAGATTACAATAATTATGAATGTGGTAAGTTAGAGAGAATTGAATATTACAATATTTGTGAATGTGATAACTCATACATGGATGCGGAATTGTCAGAAGAAGAAGTGTTGCCAGATGAAGAAGTGTTGCTAAAAGAAAAAATTAAAATTGATATTTGTGAAGATAATTTAAACGATGTTTCCAGTAATAGTGAAATATGTATTGCAGTTCCGCACAGTGCACAAATAAATGGCAAAATTGACTTGAGTTCTGACGACGAGAAGCCTCTATCTAAATTAAAGAAGCCTGGCATCCAGCCATTCAACGAGAATTACATTAAAGTCCTTTACTTGTCCAGGGAGGAACAAATAAAGGATGTGGAAGCCAGAAAATTGTCGTTAAATTACAAAAGAAGTCCTTTTAAGTGTTCCTTGTGCTTTAAAGGATATTTAGAGCAGAATGCATTCAATAATCATATGCTGCGACATCACGAATCGAGTGGCGATTTCGCTTGTGACATATGCCATGTGAGGTTACAGTCGCGACGGCAACTCAAGTCGCATTCAGTTTCAACACACGAAAGAAAGTTCACATGCACACAGTGTGATGCTGTCTGCCATACATCTACACACGCTCGTGAACATGAGAAGTGGCATCTTGGCCATACATACAAATGTGAGCAATGTAATATGACATTCAGGAAATCGACAACCTTATTAACACATATCCGACTACATCACCCGAGTAACTTTATCTGCAACGTATGCGGCGAGTCATTTCTAAGTGTGGTCGGCCTAAATGGACATAAGAAGAGAATGCATAGAGAAGATGTGAAAGAGAACAATGTGGACCTAATCTGTAGCAAATGTGATATAGTGTTTAAAAATAACGAAGCCCTGAAAATGCATGAAATTAAAGATGTACATGATATTACGAGGGCATGCAGGGAGTGTGGTGATAATTTTAGCACGAAGGAGCAATTGACCTCACATATGAAAGGTCACACTGAAACTTCAGTACAATGCGAACAGTGCAGCGCCAAATTCCCAAACGCCCGAAAATGTTACGCCCACTTCTCGCGGATGCATTTGGGCATTGGGCATACACACAGGAAACATAATATTGTTTGTGAAGTGTGCGGGAAAACGTTCCTGTCTAACGCTGCACTAAGGTATCACCAACGCACGCACACGGGTGAGAAGCCGTACGAGTGCCAATTATGTCCGAAGAAGTTCAGCCTGCGCCAGCGGCTAGACAATCACATACGGACGCACACAGGGGAGAGACCGTTCCCCTGTTCGGTCTGTTCGAAGGCTTTCAAGCATAAGGCGGCGTTGAATAGACATTTGAGGATCCATTCGGGCGAGAAACCATACACTTGCCGGCATTGTGGTAAATCATTTTCACAATCCAACTCTGTCAAAATGCATATACATACGGTACACTTGAAACTACCCCCGCCCTACAAGGGGAAAAAGAGTGAGAATGGTCCAGAGGAGTTGACATGA
Protein Sequence: MGELYACRLCFATDIKLCKIKQGTVVENIKKLLGYDILQNNKLPKYLCYLCLNLIKKYITFVDKCKLSLYLFNEYIQDQCKITTKLCKNINNKVNYMKCVKSETIILDTLAAVDVKQENIEDYNNYECGKLERIEYYNICECDNSYMDAELSEEEVLPDEEVLLKEKIKIDICEDNLNDVSSNSEICIAVPHSAQINGKIDLSSDDEKPLSKLKKPGIQPFNENYIKVLYLSREEQIKDVEARKLSLNYKRSPFKCSLCFKGYLEQNAFNNHMLRHHESSGDFACDICHVRLQSRRQLKSHSVSTHERKFTCTQCDAVCHTSTHAREHEKWHLGHTYKCEQCNMTFRKSTTLLTHIRLHHPSNFICNVCGESFLSVVGLNGHKKRMHREDVKENNVDLICSKCDIVFKNNEALKMHEIKDVHDITRACRECGDNFSTKEQLTSHMKGHTETSVQCEQCSAKFPNARKCYAHFSRMHLGIGHTHRKHNIVCEVCGKTFLSNAALRYHQRTHTGEKPYECQLCPKKFSLRQRLDNHIRTHTGERPFPCSVCSKAFKHKAALNRHLRIHSGEKPYTCRHCGKSFSQSNSVKMHIHTVHLKLPPPYKGKKSENGPEELT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -