Ttri001067.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992311.1:5715154-5724306[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00067 0.038 14.7 0.7 2 20 208 226 207 229 0.94 2 11 0.069 3.9 8.4 1.3 2 23 234 255 233 255 0.96 3 11 0.00023 0.013 16.2 1.2 3 23 263 284 261 284 0.96 4 11 0.00036 0.02 15.6 0.7 2 23 293 315 292 315 0.96 5 11 0.0013 0.071 13.9 2.4 3 23 323 343 321 343 0.98 6 11 0.00086 0.048 14.4 1.9 1 23 349 372 349 372 0.96 7 11 0.08 4.5 8.2 0.7 1 20 377 396 377 398 0.95 8 11 1.2e-05 0.00066 20.2 0.6 2 23 401 422 400 422 0.96 9 11 0.0013 0.075 13.8 1.0 1 23 428 450 428 450 0.96 10 11 0.0037 0.21 12.4 1.1 2 23 457 478 457 478 0.97 11 11 1.6e-05 0.0009 19.8 1.3 1 23 484 506 484 506 0.98
Sequence Information
- Coding Sequence
- ATGAATATTTGTAGAGCTTGTTTATCATCGAGTAAAGTTGATGACATGATAAATATTGATGAGAAGTGTATCGAAAATTACAATATACTAACGAATTTAAATATAAGTGAGAAAGATGGAATGCCACAGGAATTCTGTAAGAATTGCTGGCTTTTGCTGCTTAAATTCATGGAATTTAGAGATAAGTGTATATCTTCCGAATCAACATTAAGAGAAGCTATAAAATCTGATGTGAAAATAGAAACAAAAGAGGAAACTGATTGTTTTAAAAATGTAGAAACAAAAGAGGTAACCAATTGTGTAAAAGAAGTAGTTATAAAGGATGAACCATTAGATATACAAGGAGTTGAGGTATTGGATCCAGATACCTTTCTAGATGTGTGTTTTGCAAGTCATTCCCAATATGATAGTGGTCAAACTTATTGTTCAGATGATGATGATGATAATGAAAGGAAGAAAAGAAAAAAGTTGAAAAAATCTAAAAGGCTGAAAAGTATTAAAATTTCAAAGAAACTTCTTCATAAGGAAAAAGACGATGATCTAGCGGTGGACGTAAAACTTGAGCCTGACCTGCAATATCAAAAAGAAAATGTAATTGTTGGAGTCAATGATGAAATAATTACATGTGGTCTATGTCCAAAAACCTTCGATGACAAATCATTATTATTAGTTCATTTGGATTGTCACAAAGATGATTTGAATTGTCAATATTGTTTTGAGTCGTATGTTGACAGGCCTCACATACTATCACATCGATTACGTCATTTGCCAATGAATAAATCAAATTGCCCATTTTGTTGGAAGAGGTTCCGAAGAGATTTCTATTTAGAATATCACATTAGAAAACTGCATTGTGATGATGAGTACCAAGGATTAAAATGTAAAGTTTGCCTCAAGATTTATGACAAACCACGTTCATTAATAAGACATATTAAAAGGTCACATAGCAATGCAAAGATATATGGATGCACAATATGCAGTAAATTATTTCATACGACTCAGTTATTAAAGTCACACATGAGAGTACATTCTACTGAAAAAAAATTCGTGTGTGATCTTTGCGGATTTTCATGTAAATATCCTGGATCGTTACGGGAACATAAGCTACGTAAGCATACAGTTGAGAAGTACCAATGCAAGAGTTGTACTGCATTGTTTCCAAGGAAGGAGCTATTACTCGATCACCGCTGTGCGAGTCTCATGTGTGCGGTGTGCGGGAAGGAATTCAAGAAATCAAATGCGTACACCAGACACCTAAGGAGCCATACGGACGAATGCAGGTATAAGTGCACACGCTGTCCAGCCAAATACAAAACAAGAGAAGCACTCAAAGTACACAATGACAGGCACGACGGGAATCGAACCAGGGAATGTGAAATTTGCCATATGAAATTCTACTCCTACCCAGTGCTTTTGAAACATAGAAGAATACATACTGGTGACAAGCCATACGTATGCAAGATATGTTTCAAAGGCTTCACGGGTGGACATAATTTAAAAGTACATATGAAAGTACATGGAGAGATGTTAGTTGTTAAGAGAGATCAGGAGAGTGTTAAAAAGGAATAG
- Protein Sequence
- MNICRACLSSSKVDDMINIDEKCIENYNILTNLNISEKDGMPQEFCKNCWLLLLKFMEFRDKCISSESTLREAIKSDVKIETKEETDCFKNVETKEVTNCVKEVVIKDEPLDIQGVEVLDPDTFLDVCFASHSQYDSGQTYCSDDDDDNERKKRKKLKKSKRLKSIKISKKLLHKEKDDDLAVDVKLEPDLQYQKENVIVGVNDEIITCGLCPKTFDDKSLLLVHLDCHKDDLNCQYCFESYVDRPHILSHRLRHLPMNKSNCPFCWKRFRRDFYLEYHIRKLHCDDEYQGLKCKVCLKIYDKPRSLIRHIKRSHSNAKIYGCTICSKLFHTTQLLKSHMRVHSTEKKFVCDLCGFSCKYPGSLREHKLRKHTVEKYQCKSCTALFPRKELLLDHRCASLMCAVCGKEFKKSNAYTRHLRSHTDECRYKCTRCPAKYKTREALKVHNDRHDGNRTRECEICHMKFYSYPVLLKHRRIHTGDKPYVCKICFKGFTGGHNLKVHMKVHGEMLVVKRDQESVKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -