Ttri008516.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992322.1:11892438-11904812[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.1 1.8e+02 3.2 0.6 1 23 543 565 543 565 0.96 2 11 0.00054 0.03 15.0 6.5 1 23 581 603 581 603 0.99 3 11 4.3e-05 0.0024 18.5 3.0 1 23 609 631 609 631 0.97 4 11 0.00019 0.011 16.4 1.9 1 23 638 660 638 660 0.98 5 11 0.00011 0.006 17.2 1.3 1 23 666 688 666 688 0.96 6 11 3.2e-05 0.0018 18.9 0.2 1 23 694 716 694 716 0.95 7 11 2.2e-06 0.00012 22.5 0.8 1 23 722 745 722 745 0.96 8 11 0.0027 0.15 12.8 3.5 1 23 751 774 751 774 0.94 9 11 0.00011 0.0065 17.1 2.0 1 23 780 802 780 802 0.97 10 11 8.5e-06 0.00048 20.7 1.3 1 23 808 830 808 830 0.98 11 11 0.0016 0.088 13.6 0.0 1 22 836 857 836 860 0.92
Sequence Information
- Coding Sequence
- ATGTCTATTTATTTAAAGTCATGTCTGATCTGTAACTCATTTAAAATTAATAATTGTGTTTCAATATTTGATAATGAATTAGTACTAAAATCTGGTACGAAATTGACAACAATTGTTAGTAAAATACTTGACGAACAAGTAACAAAGACCAAATCCCAATCCAAAGAGCTTGTATTGTGTAAATCATGTTATGAATACTGCATAGAATACGATGTATTGCATTCAAGGTTGTCAGAAATAAAAACGGGCTTAAAACTCCAACACAATTCATCATTATTAAAAGGTGATAATCAGAATGAAAAACCAAATATATCGAAACCAAATACGCCTAAGAAATTGGTGTTGCCAGCTACAAAATTAAAACCCGTGTCTCCAAATTTCATAATTAATATGGCGCCATTAGTTACTAATGTAACTCCAATAGTTACCAATACCACAGCAGTAACAAGTGCCACATCGAACCAAACCATTGAAATAAAATCAGGAATGCTATTATCAAATAAAAAAACAACAACAACGCCTACAATTAAATATCCAAATATTAATATTTTGAAATCACCTCCAAAGATAACAAAACAAATACAAAAGAAATTACCGAAACTTGCTCCGAAAACTTCAATCCAAATAGCTCCTAAAATGAATGTATCTCAGAATCAAAATATAATACCTGTTATATTACCCAGGACATCAAATATATTAGCTAGTTCTACTTCGTTATTAACAAATTCCAATTCGTTACTACAAAATCCAAATTCATTACTCCAAACTACGAACACCACACAACTGAAAACAACATCTTTACTTCAAAGTTCCACATTGTTACGGCAGACATCTAAAATAGCAACTTCAACACCAGTGTCTATATTGCGAAATACATTAACAAATAAAAGGAAAGATTATATTGAAAGTTTGGGTTCAAATGTAATAATGCATGAACCTATGGATATTGATGAAGAATGTACTTATGTACATGTTGGTACAGGTGAAGTAGGCAGAAATATATTACAAGAAGTCGATGAAAGTAATGAAGAATTAATAAAAATAACATTACCAGACATAGATGAGACAAGCAATGATGATCCCTTAAAGGAGTCTGATTATGTTATTGGAAAAGTTGAAATTATGGAAGGGGATAATGAATCAGGAGACGATGATCATGCTATAATAATGGAGGAAGGTGATAATGGTTCAATAATAAGGTTAATGTCTGGACAAAAGTTTATATATAATGATAAAGAAATATCACTCATTATACCGGAGGCTGATAATGACGATGATGCAGATGATAATGGGGCAAGTGATAGTCAGGAAGTTGATAATATTGAAGAATCTCAAATAGAATTAAAAATGGCTGGTGATGAAAAAACTGCCAACGCCATTAAGAATGCCGCTTCTAATCATGGCACAACTTATGTAAAGACCGCAACTGGCGAAATGTTCGAAGTGGAAAGTGTTGCCACTGAAAAGGAAGAAGAGTGCACGAACGATGCGCCTGGCATTGTGACACGCGATGGCAAACATTATAAATGTGTTTTGTGTGAAAAACATAAATCCGAAAGTAGGACATTCAAAGCGGAAGGAGACATAATGATGCGTCACATACGCGAAGTGCACAATGCAAGAGTTTACATATGCATGACATGTAAAGCTATTATGAGGAAGAGGTCAGATTATACGGACCATGTGACAATGCACGCGGAAGAGTTGACCATCAACAGTGGCTTTGAACGCAACAAACAATACGAGTGCCACCATTGTTCAAAGAAGTTCACATCAAGGAACATTCTAAAGGATCATATGAATACGCACGATGGCACTAAAGCGCACAGATGCGAGCAATGCAACAAGACTTTCGCCTCCAAATATACATTTCAAGCGCACGCAAAGATACATACAGACAGACCAAGGCCCTTCACTTGCAGCCTGTGTGAAAAGTCATTCTACACGTTGCAGAACTTGAGTCAGCATTCGAAGATACATGAAGTTAGGGAAGAATTCGAATGTCTTGTTTGTCACAAAACGTTTGGGTCTCAGCACAATTTGGAAGTGCACGGCATTGTTCACTCTGGTAAGAAGCCATTCTTGTGCGGGGTTTGTGATAAGCGGTTCGCGCGTCGTGCTGAGATTAGAGATCATATGCGCATCCACACAGGGGAGCGGCCATTTAAATGTGACATTTGCGGTTCAGCGTTCTCACAAAGATCTAATTTACAATCTCACAAGCGTGCAACGCATTATAACGATCTGAGATATTCGTGTACTCAATGTCCGAAGAAATTCAAGAGGCGCAGATTGCTGGATTACCATGTAATGGCTTGCCACACTGGTGAGCGGCCGTTCAAATGTGATTTGTGCGATTCCACGTTTATATATCCGGAGCATTTCAAAAAACACATGTTAGGCCACACGGGAAGCAAACCATACGAATGTAATGTATGCAAGAAGGCATTTTCGTCGCGCGACAATCGGAACGTTCACATGTTCACTCACAGCGACCGCAAGCCATATGAGTGCGTGGAGTGCGGCGCCAATTATATGAGAAGGCCCCAATTGTTGGCCCATATGAGGAATGCGGGTCATTTAGCAGAGAAAATAATTATAAATAACAAACCCAAATTTTATTCTGTCAATGAGGGACTTACTGAGAATTTACTGCAAGGTAGTGAGATCGAACCGACACCCAGTAATTCGGAGGAAGCGAAGCTGCTAATCACCAACAAGGGGATAATATTGCGCGATGACATAGGCAACGAGCAAATGTACACGGTTGATTTTGAAAATTCTGTCAATTCACAACAATTCTTCACTGCTGAATTAACAGATGAAAACATAACGAATGCAACGGAAATTTGCGAAGCTCAAATTGAAAATGTAACTGAAAACCAACAGGAGATCATTGCAAAGGATAGCTCTGGTGGTGTTATGTTTCGGTTGGTACAAATGAAATTGGAGAATGGTGAACGTGGCTGGGTTACTCTGGAAGAATGA
- Protein Sequence
- MSIYLKSCLICNSFKINNCVSIFDNELVLKSGTKLTTIVSKILDEQVTKTKSQSKELVLCKSCYEYCIEYDVLHSRLSEIKTGLKLQHNSSLLKGDNQNEKPNISKPNTPKKLVLPATKLKPVSPNFIINMAPLVTNVTPIVTNTTAVTSATSNQTIEIKSGMLLSNKKTTTTPTIKYPNINILKSPPKITKQIQKKLPKLAPKTSIQIAPKMNVSQNQNIIPVILPRTSNILASSTSLLTNSNSLLQNPNSLLQTTNTTQLKTTSLLQSSTLLRQTSKIATSTPVSILRNTLTNKRKDYIESLGSNVIMHEPMDIDEECTYVHVGTGEVGRNILQEVDESNEELIKITLPDIDETSNDDPLKESDYVIGKVEIMEGDNESGDDDHAIIMEEGDNGSIIRLMSGQKFIYNDKEISLIIPEADNDDDADDNGASDSQEVDNIEESQIELKMAGDEKTANAIKNAASNHGTTYVKTATGEMFEVESVATEKEEECTNDAPGIVTRDGKHYKCVLCEKHKSESRTFKAEGDIMMRHIREVHNARVYICMTCKAIMRKRSDYTDHVTMHAEELTINSGFERNKQYECHHCSKKFTSRNILKDHMNTHDGTKAHRCEQCNKTFASKYTFQAHAKIHTDRPRPFTCSLCEKSFYTLQNLSQHSKIHEVREEFECLVCHKTFGSQHNLEVHGIVHSGKKPFLCGVCDKRFARRAEIRDHMRIHTGERPFKCDICGSAFSQRSNLQSHKRATHYNDLRYSCTQCPKKFKRRRLLDYHVMACHTGERPFKCDLCDSTFIYPEHFKKHMLGHTGSKPYECNVCKKAFSSRDNRNVHMFTHSDRKPYECVECGANYMRRPQLLAHMRNAGHLAEKIIINNKPKFYSVNEGLTENLLQGSEIEPTPSNSEEAKLLITNKGIILRDDIGNEQMYTVDFENSVNSQQFFTAELTDENITNATEICEAQIENVTENQQEIIAKDSSGGVMFRLVQMKLENGERGWVTLEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -