Ttri000619.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992318.1:11155314-11168613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00033 0.019 15.7 3.4 1 23 225 247 225 247 0.97 2 11 0.00018 0.01 16.5 7.6 1 23 253 275 253 275 0.96 3 11 0.0016 0.092 13.5 7.9 1 23 281 303 281 303 0.98 4 11 0.0016 0.088 13.6 1.1 1 23 309 331 309 331 0.95 5 11 7.4e-06 0.00042 20.9 0.7 1 23 337 359 337 359 0.97 6 11 8.2e-06 0.00046 20.7 0.1 1 23 365 387 365 387 0.98 7 11 0.00017 0.0095 16.6 1.0 1 23 392 414 392 414 0.97 8 11 0.0036 0.2 12.4 1.1 3 19 422 438 421 444 0.92 9 11 9.1e-05 0.0051 17.4 0.5 1 23 518 540 518 540 0.97 10 11 0.022 1.2 10.0 1.5 3 23 601 621 599 621 0.92 11 11 3.4e-05 0.0019 18.8 4.3 1 23 631 653 631 653 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCGACTCCCACAAATGTTCCCGGATTTGGGTATTCGTGGGGGTTCCCTAGTTCGGAACTTGGCAAAGGTGAAGTTGATACACCAAGTAGTCTTAGCTATACTTTGGGTAATGCAGTGGCACCTGAAACTACAATGACCCACAAGTCACCGCTGACACAGGATAAAGTAGGTACAGTAGCTGTCACAGTTACAAACTCTGCTAACGTTACTCGAGTTGTCACCACGCCAGTCACAGCAAAAAGAACAATGTTTGTTTTAAATGATGGATTGACATCCACACATGTTGTCAATAGAGTCTCCCAGCAGAATCATACTGCCACTATACAGACAACAAATCTAGCTTCAAAACCATTCATGACACCACTTGGACCAATACAGTTAACTGCTGAAGAATGCAATGAAATCTTAATGAAAAGAGCATTGCAGGCACAAGGAATCGCCACCCCGGTCATTGACACATCACAACTTAGTCATTCAATATTCAACGGCACTATAAAGAGTTTAACGGAAGCATCAACACAGCAAAGTACGCAGGACAGCATTGATACTATGATGCAACAACATAATTTGTTGCATACTACAAAACAGGAGCCTGGAACGGCTAATACTTCACCTAAGACTGTGTATTCGCAGACCACAACCCCAGTGGTCAAGGACAGGCCCTACTCATGTGACGAATGTGGAAAGTCTTTCTTATTGAAGCATCATCTTACGACACATGCAAGAATACACACTGGTGAAAGGCCCCATGTATGTACACACTGTGGTAAAGCATTTGCGAGGAAACACTGCTTGAACACACACCTGTTGCTGCATACGTCCGAAAGACCATACAGATGCCACGAATGCAAAATGTCCTTCACATTAAAACATCATCTTGTCACACATTCAAGGGTACACAGTCGTGATCGGCCATTTGTGTGTGGCGAGTGCGGCCGTGGTTTCCCATTGAAGCGGCATTTGGTGACGCACAGCAAGTTCCATGCTGGGGAACGGCCTTACGTCTGCAATGACTGCGGCGAGAGCTTTGCACAAAATGAACACTTGGTAATGCATTCGCGTTTCCATGGTTCGGTATCGCCTTTCGTGTGTTCGGACTGTGGCATTGCGTTTGCTAGAAAGTTCCAACTTGTTAATCATGGGAGGGTGCATGGCAGAGTACCACACTCCTGTCCGGTGTGCGGGAAGGAATTCCTACAAAAACGGACACTCATTTCACATTTAAAAATCCACACGGGCGATGGTGTTGTTGCATGCTTAGAATGTGGCGAGGCGTTCAAGTCCAAAGAGGAGCTCCAATCGCATTGTAAAATAAATAGACACTGTTTAACATCTATTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAATTTTACATGTACTTGGTAATGACGGTCACGTGATCACGGAGAAAGCGCCTGGTTACGCTTGCCAGGAATGCGGATCCTGTTTTAATACTAAGGAAGCTTTGGCGTTACATGTGCGGCTACATGCAGGTGATCGCACTTGTGTGACAGATCTGTGCGCGCTGACGGCTGCGTTGCAACCAGGATTGGTGGCACAGCAACAAAATCCTATTCAAATTATATCCTCGAATCCCAGTAATGTTGTACATACGCAAGTAATAGCTACGAATCATCACGTAGTCCAGCCTCGGCCAAAAGTACATTTTTGTATAGATTGCGGTAAAGGCTTCGCGGCAAAACATGGATTAATAGCACACAATAGAAGACATCCGGACGGTAGTTGTACCTTACGCACACACGTCTGCGACCAATGTGGAAAGGCGTTCTTCCAGAAGAACCATCTAATGCTGCATCAGAGACAACACATGGATCTGCCCAGTAGAAGTATAAATAGGAATGGTCAAGTGATCGGCAATCAGATCTTAGTCGGCGGTTTGAACTCTAGAAGACAATTGATTGGTTCACAACTTCATATAATAGGCAGAGATGGAAAGACGCTCGGTACACAAGTTCCACATAAAGATCGACACGGAGCCGACGTAAAAGATTTGGGTAACTTGCTGTCAGCGCGGACCGGAATAAAATATGAAATAAGTTTAAATCCACCGTCTTCAGTAGTCCAGGTTCACCAACTTGACTGA
- Protein Sequence
- MCMPTPTNVPGFGYSWGFPSSELGKGEVDTPSSLSYTLGNAVAPETTMTHKSPLTQDKVGTVAVTVTNSANVTRVVTTPVTAKRTMFVLNDGLTSTHVVNRVSQQNHTATIQTTNLASKPFMTPLGPIQLTAEECNEILMKRALQAQGIATPVIDTSQLSHSIFNGTIKSLTEASTQQSTQDSIDTMMQQHNLLHTTKQEPGTANTSPKTVYSQTTTPVVKDRPYSCDECGKSFLLKHHLTTHARIHTGERPHVCTHCGKAFARKHCLNTHLLLHTSERPYRCHECKMSFTLKHHLVTHSRVHSRDRPFVCGECGRGFPLKRHLVTHSKFHAGERPYVCNDCGESFAQNEHLVMHSRFHGSVSPFVCSDCGIAFARKFQLVNHGRVHGRVPHSCPVCGKEFLQKRTLISHLKIHTGDGVVACLECGEAFKSKEELQSHCKINRHCLTSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQILHVLGNDGHVITEKAPGYACQECGSCFNTKEALALHVRLHAGDRTCVTDLCALTAALQPGLVAQQQNPIQIISSNPSNVVHTQVIATNHHVVQPRPKVHFCIDCGKGFAAKHGLIAHNRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPSRSINRNGQVIGNQILVGGLNSRRQLIGSQLHIIGRDGKTLGTQVPHKDRHGADVKDLGNLLSARTGIKYEISLNPPSSVVQVHQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -