Ttri002668.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992312.1:1898421-1910091[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 5.5e-06 0.00031 21.3 1.3 1 23 181 203 181 203 0.99 2 31 0.002 0.11 13.2 0.4 3 22 234 253 233 253 0.95 3 31 0.0023 0.13 13.0 3.5 1 23 276 299 276 299 0.95 4 31 0.07 3.9 8.4 1.4 2 21 310 329 309 330 0.91 5 31 0.021 1.2 10.0 0.4 2 23 341 363 340 363 0.93 6 31 0.0023 0.13 13.0 2.8 1 23 384 406 384 406 0.98 7 31 2.8e-05 0.0016 19.1 1.6 2 23 731 752 730 752 0.97 8 31 0.00044 0.025 15.3 4.3 2 23 788 810 788 810 0.97 9 31 0.07 3.9 8.4 1.4 1 23 860 883 860 883 0.97 10 31 0.01 0.59 11.0 0.3 1 23 941 963 941 963 0.97 11 31 0.0087 0.49 11.2 6.2 1 23 974 996 974 996 0.97 12 31 7.1 4e+02 2.1 1.8 2 23 1008 1029 1007 1029 0.88 13 31 0.017 0.96 10.3 0.2 1 23 1039 1061 1039 1061 0.98 14 31 0.14 8.1 7.4 4.9 2 23 1089 1110 1088 1110 0.97 15 31 0.0098 0.55 11.1 2.8 1 23 1121 1143 1121 1143 0.96 16 31 0.00048 0.027 15.2 0.8 1 23 1151 1173 1151 1173 0.96 17 31 0.00025 0.014 16.1 1.1 2 23 1193 1215 1193 1215 0.98 18 31 0.014 0.77 10.6 2.3 2 23 1234 1255 1233 1255 0.96 19 31 9.6 5.4e+02 1.6 3.4 1 23 1262 1284 1262 1284 0.92 20 31 0.17 9.6 7.1 0.2 2 23 1295 1317 1294 1317 0.96 21 31 0.3 17 6.4 0.2 2 23 1342 1363 1341 1363 0.94 22 31 0.52 29 5.6 0.3 2 20 1367 1385 1366 1386 0.92 23 31 2 1.1e+02 3.8 6.3 2 23 1406 1428 1405 1428 0.97 24 31 0.0045 0.26 12.1 0.1 2 23 1444 1465 1443 1465 0.93 25 31 6.4 3.6e+02 2.2 5.5 5 23 1475 1493 1473 1493 0.94 26 31 0.011 0.6 10.9 1.1 2 23 1504 1526 1503 1526 0.95 27 31 0.097 5.4 7.9 5.2 2 23 1543 1561 1543 1561 0.95 28 31 1.3 72 4.4 0.6 2 20 1565 1583 1565 1585 0.90 29 31 2.2 1.3e+02 3.6 0.6 2 23 1633 1654 1632 1654 0.93 30 31 0.017 0.98 10.3 0.8 2 23 1665 1687 1664 1687 0.96 31 31 0.57 32 5.5 0.7 2 20 1725 1743 1725 1745 0.92
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAACTGGGCGATTTTTATTCAATATTTACCGAAGACAATGGGGTACAATTGGCTGAAATGGCAACGGAATGTGCTAAAATAAAGATTTACGATGGTGATGGCTTACCAGACAAAGTATGTTCAGAGTGCATAGCAAAACTTAGCAGCGCTTACTTATTCAAACAGCAGTGTGAGCGTTCCGATGAGCAGTTGCGGAGAAACTATGTTCCTCCACCAGGTTTCAGTGTTCCAACTTCACCAACAAGACAGAGCAGTGATTCAGGGATCTCTCATCAAACAGATATATCCATTAAACCCAAAAAAGAGCCTGAGTCTAGTACCTCATGGAATCGCAAACGGAGCCTCGAAAAAGACCACTATGCTGGCCGCAATAGTTATAAGCCAGCGGCAGCAAAAAATATTGAAAAGAGAGCTCGGGTGGAATCTGAAAATGATTCCGATGAAGACTATACTATGGGCTCACAAGCATCGGCTGAAACTGATTACTCTGAGGATTCACTCAGTTACAAATGTTTGACATGTGACAAATCATTTAACTCTAAAAGGAGTTTGGCAAACCATGTGAGAATCCATAGCAAAGGCAGAGATGTGAGTAAGCCAGATGCACTTGTAGATATACCTATGAATAATGGTGAAATTCCCATTGACGAGGATAAGTCAGCGTGTAACAGATGTGGAAAGACATTTAAATTGAACATTATGCTCAATAAGCATTACATGACATGCCAAGGTATTACAGAGGATGAAGAAGTGCGTGATGAGTTCATACCTAAAGAAGACACCAATGAACATATATGCAAAGTTTGCAATAACAAGTTCAAAACTAGCATAACATTAAAGAAGCATTTGAAGAATATCCATGGTGTGTCAGATAAACCGAGGCCCAGTGTGCCATGTCTGTATTGCCACAAGCCATTCACAAACCATATATCATATACGGATCATTTTAATAAATGTGCAAATCAATCGCAAGCCAATACTTTAATTTGTTTGGTCTGCAAAAGAAAATTTGGAAGGAAGGCAACATATCTAGCTCACATTAAAGATACACATTTTGATACTGCAGACTCTTTTGAGGATGCAAATGTGTCTGCGGGTGCTTCATCAGATTCATTTGTGTGCCATTTGTGTAATCATAGTGTGAAGACGCAGGAGCAGCTCGTAACACATTTGGCAAAACACATGTCAAAGCAAATGTCTAATGATATGGAAGACGATGAAGATGACAGAATTAAAATTTCGAATCATACTGCTTCCTGTAGCGAAGACGAAACACTCACGGAAAATCCACCTAATGAAAATATTGCTGAAGCAAAAAATCATGAAGAAAATTTTGAAGAAATTATAACTATATCTAACGGTGATGACAGAACTGGTGTCTGTATTTCCATTTTTGTAAATGTGCCGGAAATTAGAGATCTAGACGAAAATATTAACGTTTCCGATCGTACTATCATTTCAACTAACAATTTGAATTCTTCAATTTCTGAGGAAGATGTTTTTACTGATTTCAACAATGTTCTTGACTTTACATTAGATGACTCCGTTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGCAATGGAAAGTAAACAAAAATCAGAACTAATGTCTTCAAAAAGATTTAGAAATAAGAATTTGAGAATGTTAGGTCAGGAATACATAGGTTTTAGAAAAATAAGTGGTGATAAATTTTCACAAGACTCTATCAAACCTGCCCGAAAACTCGGAGAGCCTTGTAATTCAAGCAAATGTATAAAGAGCATTGTCACTAACTGTGCAAAGTTCACAGAAAGCGAACGATTAAATATTTTTAAGGAATTTTGGGCGATGAGCTGGATTGAGAAGCAAGTGTATGTTTCTTCTTTGGTAGATACAAAGCCAACTAAAAGGGAAACCACACAAAAGGCTCACTCAAGAAGAGGTATTACAAAAGTCTATTATTTAAAGTTAAATGACCAAAAAATGAGAGTATGTTTAAAGACGTTCTTAGGTACATTGGGAATTAAAGAGTGGACAGTAAGATACGCAGCGGACGACGCGACATCAAACTATTCTGGCGCATCAACTCAAGGAGTTAAAAATCTCAAGTGTAAATATTGCGATAAGAGATTCATATACAAGAAGCCATTATTGAATCATATGTTAACGCACACTGCTGACAATATCATCAAACAGGAGTTTAATAATAGCGAAGCACCTCCTGACCCTCCTGATCCTGATGACGAGGAGGATCAATCGAGTGAGGAGGAAGACAACACGTGCGACATATGTGACAAACGATTCTCATACAAGCGGCTATTGGTGCATCATAAGAAAACCAAACATAATATCAGCTCTGGGTTCAAGCGTGCACGCATCATGCTAAAGGATTGCGACATGCAGTGTCTCATTTGTGATGCCAAAATGAAGGTTAGCCAAAGCCTTGAACACAACAAAGTCCATATAGCAGCTGGCATCAAGCCCAAAAACCTGTACACTTGCCTCGCATGCAGTGATACATTCAAATCCTGTCAAAATCTAGCCTCTCATATTAAAATGGCGCACAGGATCAACAGCCTCTCACCAAAGAAGTTCAGTATTGAGAATGCGGCGGATTTTTGTGAAGTCGTTGTGGCGAAAACGGAACCCCTGGACAGCGTCCAGTGTCACAACGACTTCCGGGAGGTTCCTGGAGAGATAGTTGATGGTAAACAGGCACTGATTGATCTTGCTGGCTTCACTTGTCCCATGTGCAGTAAGAAGATGCCCACGCTTATATCTCTCAAGAGACATGTCAACTGGCATTCCAACGTCGGAAATACTATTGAATCCAAGCACGAATGCTTCGTCTGCAAACAGTCTTTCAGATTCAAAGGCCACTACAAGTTACATATGAAAGCGCATTATTTGGACCCAAATATAGATCCGAAATTCCTAACATGCGAGATTTGCAATCGTAAGAGCAAACATTTGAGGGCTGCCCTCATGCACAAGAACTTCCACAAACAAGTTCGATTCGGCAACAAGGACTACGAATGTGCGATATGCAAGAAAGTCTATCAGGACAGGAGAGTGTACTTGTCACATATGGCCATACATTACAAGCGCGGTGACAATTTACAGAACGTGATCATTGGACTCAATACGCAAGATGGCAGCCCCGCGACAGTTGGGCCCAATCAGTGTCCGCATTGTGGCAAACAGTGCGACTCAGAGGCATCGCTCAAATGTCACATTAAATGGCACAAATCGAAGTCATCGTTGTATGCGGCGAGGTACGAATGCCACATTTGTAAACAAGTGTTCACCAACAAGAGAAGACGAGAACTGCACGTGCGCGACCACTACGAGCACGCGGACGGCCCCTTTAAGTGTCACATCTGTGGCAAAGGATACATCGACGGCGAGTACTTCCGTCGACACGTCCTGGGGCACAACTTCGACCATAAAACGCACAAGAAGCGTATCGCCAAGCTTAAGATGCTTAAGGCTAAGTGTCCGATATGTCCGCGGCACTTTTCCGACTTACCTAAAATGATCCGTCACTTGCGCCGCATGCACCCTGATGCCAAGATGGTGAAAGAAGACCCTGACGCACCCCCGCCCACATTGCTGCATTGCGAGCTTTGTGCCAAGGTGTTCACGACCGAGAGACGCCTGCGCTCCCATCAGAGCTCGCATCTCCGGAGACATAGCTTCTTTAAATGCAAGTTCTGCGGCATCAAGTCCATGTCTCGCAAATACCACAACGTGCACATTAAGGGTCACCTCACTAGGAAGTACAACGACAACCCTCTCAAGTGTCCTGAGTGCTTGGAGACTTTTGTGTGGGGTTACGCGTTGCACCGCCATCTACAAACCGCTCACAACATCACCGAGGATTGGGTCGCGGATGCCAAAGATGGCGCCGATGGGGCCGACGGCGTTCTCCAGGATCTGCAGTGTTCCATATGCATGAAGGTGCTCGCGTCCAAAGGCAATTACGGAAGACACATTGACTTCCACAATATGTTGCGTTGCAATTATTGTTTCGAATACTTCACTTCACTCAAATTTTTGGAGGGCCATTTGGCATTCGCTTGCGAGAAGAAGAAACTTGTGGGCGACACGGAGGTGTATCCCAAGAAAGTGAAGTGTCACATCTGTTACAAAGCGTTCCATGTTCAGGTCAAATTGGACTGCCATATGAGAACAAAACACGGCGTGCTCGTGAACAGGGAGCGGTCAGAGAAGGAGAAACAGATCGTGTGTGATTATTGCTTTAGAGTATTTGAAAACGAAGACGCTCTCAACGCTCACAAGGTGTACCATCGAAGCGTCGGTTATTTCGGTTGCATATATTGCAGTAGAAAGTTCAACACTATGACTCAGTACAGAAAACACAAAAACCACCACTTCGTTCAACTCAACGTAGACAATCCGACCAAGTGCGAACATTGCGATGAGACATTCGTCGCTTTCAGAGAATTCATCTATCACATGCGCGACGAACACGGCGATGACAAGGAGTGGGTGGTGATGCCCAAAGAGGTCGGCGAAGGCGAATGTCATATTTGTCACAAAGTATTCTACAACCTGCAGCGCCATCTCCAGTTGCACGAACAAAACCGCTGCAAGAAGTGTGGCGAATATTTCATGTCACTGCCAGATTATGACAATCATTTGTGTGCCATTGAGAGCGATGATGACCCCGACGAGAACGTACAAGACATACGGCCTAAATACGAAGAATGCACTTTCTGCTTTAAGCCGATCACTAAAACCAGCTCCAAACTCAAACACGACCTTATACACAAGGGCTCAGGTTCAATTTCGTGTCGCTTCTGCGCGTTGAAATTCAAGACCATGGATGCATTCAACATACACGCGTTCTCCCATAGAAGTCGGAAGTACAACAGGAACCCACTCAAGTGTCGCAAATGTGAGGAGCGATTTATAAAGTATGGGCCGTTCATAAAGCACATGAAGTCTGTGCACAATTTCAGCGAGAAGATGCACTACCGCACCACGATATTGCCGGAGCCGTGCGTCGTTTGCGGCGGGAATTTCCCCAATTTGCACAACCATTACAGGGCGCACCTGCTCAACCGTTGCAATGGTTGCGGGCTCTACTTCACGTCGACGCGCGTCTTCGAAGCGCACAGGTGCGGCGTCAACGACAATGCGGACGAGCACGTGTTCGAGTGTCACAACGATCTGAACGTACTCATCAAGCAATACATTCCCAAGGACGAAGTCGGCGGACACAAGTATTATGGGGAAATGGACGATGATGACAAAGTGGACGAGCCACAGAATGAAGTGAAATGTGTTGATGAAAACAGCGAAAACTCTCAAATGTCCAACGAGGAAGTGTTGATGCCCATTTCGATTCAGTCACCGATAATATGCGATGTTTTGTCATTATACGAAGGACATCAGAAAGCTGTTAAACAAAACGACAATGATAGCGATAGTGTGGTTGAGATAATTGATGACGATTCAAGAGATGCGAATATTAATGCGGAGGTTATTACTATTGATGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTEDNGVQLAEMATECAKIKIYDGDGLPDKVCSECIAKLSSAYLFKQQCERSDEQLRRNYVPPPGFSVPTSPTRQSSDSGISHQTDISIKPKKEPESSTSWNRKRSLEKDHYAGRNSYKPAAAKNIEKRARVESENDSDEDYTMGSQASAETDYSEDSLSYKCLTCDKSFNSKRSLANHVRIHSKGRDVSKPDALVDIPMNNGEIPIDEDKSACNRCGKTFKLNIMLNKHYMTCQGITEDEEVRDEFIPKEDTNEHICKVCNNKFKTSITLKKHLKNIHGVSDKPRPSVPCLYCHKPFTNHISYTDHFNKCANQSQANTLICLVCKRKFGRKATYLAHIKDTHFDTADSFEDANVSAGASSDSFVCHLCNHSVKTQEQLVTHLAKHMSKQMSNDMEDDEDDRIKISNHTASCSEDETLTENPPNENIAEAKNHEENFEEIITISNGDDRTGVCISIFVNVPEIRDLDENINVSDRTIISTNNLNSSISEEDVFTDFNNVLDFTLDDSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAMESKQKSELMSSKRFRNKNLRMLGQEYIGFRKISGDKFSQDSIKPARKLGEPCNSSKCIKSIVTNCAKFTESERLNIFKEFWAMSWIEKQVYVSSLVDTKPTKRETTQKAHSRRGITKVYYLKLNDQKMRVCLKTFLGTLGIKEWTVRYAADDATSNYSGASTQGVKNLKCKYCDKRFIYKKPLLNHMLTHTADNIIKQEFNNSEAPPDPPDPDDEEDQSSEEEDNTCDICDKRFSYKRLLVHHKKTKHNISSGFKRARIMLKDCDMQCLICDAKMKVSQSLEHNKVHIAAGIKPKNLYTCLACSDTFKSCQNLASHIKMAHRINSLSPKKFSIENAADFCEVVVAKTEPLDSVQCHNDFREVPGEIVDGKQALIDLAGFTCPMCSKKMPTLISLKRHVNWHSNVGNTIESKHECFVCKQSFRFKGHYKLHMKAHYLDPNIDPKFLTCEICNRKSKHLRAALMHKNFHKQVRFGNKDYECAICKKVYQDRRVYLSHMAIHYKRGDNLQNVIIGLNTQDGSPATVGPNQCPHCGKQCDSEASLKCHIKWHKSKSSLYAARYECHICKQVFTNKRRRELHVRDHYEHADGPFKCHICGKGYIDGEYFRRHVLGHNFDHKTHKKRIAKLKMLKAKCPICPRHFSDLPKMIRHLRRMHPDAKMVKEDPDAPPPTLLHCELCAKVFTTERRLRSHQSSHLRRHSFFKCKFCGIKSMSRKYHNVHIKGHLTRKYNDNPLKCPECLETFVWGYALHRHLQTAHNITEDWVADAKDGADGADGVLQDLQCSICMKVLASKGNYGRHIDFHNMLRCNYCFEYFTSLKFLEGHLAFACEKKKLVGDTEVYPKKVKCHICYKAFHVQVKLDCHMRTKHGVLVNRERSEKEKQIVCDYCFRVFENEDALNAHKVYHRSVGYFGCIYCSRKFNTMTQYRKHKNHHFVQLNVDNPTKCEHCDETFVAFREFIYHMRDEHGDDKEWVVMPKEVGEGECHICHKVFYNLQRHLQLHEQNRCKKCGEYFMSLPDYDNHLCAIESDDDPDENVQDIRPKYEECTFCFKPITKTSSKLKHDLIHKGSGSISCRFCALKFKTMDAFNIHAFSHRSRKYNRNPLKCRKCEERFIKYGPFIKHMKSVHNFSEKMHYRTTILPEPCVVCGGNFPNLHNHYRAHLLNRCNGCGLYFTSTRVFEAHRCGVNDNADEHVFECHNDLNVLIKQYIPKDEVGGHKYYGEMDDDDKVDEPQNEVKCVDENSENSQMSNEEVLMPISIQSPIICDVLSLYEGHQKAVKQNDNDSDSVVEIIDDDSRDANINAEVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -