Ttri011906.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992319.1:2198221-2204213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.32 18 6.3 1.7 1 21 151 171 151 172 0.91 2 13 0.45 26 5.8 0.6 3 23 179 198 178 200 0.90 3 13 0.00028 0.016 15.9 1.4 1 23 202 224 202 224 0.98 4 13 0.00023 0.013 16.2 1.2 2 23 238 259 237 259 0.97 5 13 3.2e-05 0.0018 18.9 1.2 1 23 268 290 268 290 0.98 6 13 1.3e-05 0.00074 20.1 1.4 1 23 296 318 296 318 0.98 7 13 1.5e-06 8.3e-05 23.1 2.6 2 23 325 346 325 346 0.97 8 13 2.3e-07 1.3e-05 25.6 0.6 1 23 352 374 352 374 0.95 9 13 0.00023 0.013 16.2 2.6 1 23 380 402 380 402 0.93 10 13 3.5e-06 0.0002 21.9 0.2 1 23 408 430 408 430 0.98 11 13 1.8e-06 0.0001 22.8 5.0 1 23 436 458 436 458 0.98 12 13 5.7e-06 0.00032 21.2 1.7 1 23 464 486 464 486 0.98 13 13 0.007 0.39 11.5 0.5 1 20 492 511 492 514 0.94
Sequence Information
- Coding Sequence
- ATGTCTAATCTAGAATCTATTTGTTTAACTTGTTTGAGTGATGAGAACTCACTTGAGGACGTTTACTTACCATTAATTGCTGAAGAGCATAGGCATATTTCCCTATTGGATGCACTTAAAAGTTGTGTACCATCTCAGATAATATTCTCTGATAATATTCCAAATAAAATATGCGATAAATGCAAAAACTTACTGCAAATCTCATACTCATTCCAATTGCAAGTATTGAGATCACATGAGAAACTAAACGAACTGAAGCAACAAGAATCAATAAAAATAAAATTAGAACTAGGAGAATTGAAGTTAGAAAATGATGCTGAAGATACAAAAGAAGAACTATTTACTGATGATGATAATGACGGTAGTCATAATGATGATTATGAATTATGTTCAGAACCACTGAAAACAGAGGATGAAAACATAGAGAATGTTTTGTTAAACAAACAAACATACCTGTGTGATAGATGTACAAAAGTCTACCACAGCAAAGAAGAATTTGATATACATTTATGTGTACTTGAAAATAGACGCCCATGCCCAATATGTAATAAACTATTAAAAACCGAGTCCTATGAGAAACATTACAAAAAACATATAAAAAAGTTTGAATGTAATATATGTTTGAAACAATTTAAGAACGAGAAACTACTTTTAAAACACAACCTCACACATGTAGAAATAGAAGAAGTGAAAACTAATAAGGAAGGTTTAAAATGTGAAAGATGTGAATTAAGTTTTACAAACATTAGACTTTTGAACACACATTTACGAAGGCATGAATTAGAGAGACTTAAATGTATATTTCAATGTGATATGTGTGAGAAGGAATTTAGTACAAAAAGTATATTACGAAGACATGTGAAGTTACATTCTAAAGACAAAAAGTATAAGTGTATCAAATGTCCCAAAAGTTATTCGAGACGTGATCAGCTAACTGACCATTTGAATACCCATGATGGTGTTAAGCCTAATGTATGTTCCTATTGTAATAAAGCATTTAGTCAACTATGTAATCTGAAGGACCACATACGCACGCACACAGGGGAAACCCCATTCCTGTGCTCCGAGTGTGGGAAAGGATTCAACAACAGTTCCAATTTACGTCAACACATAATTAGGCACACTGGTGTAAAGCCATTCTCATGCATTTTATGCCCAAAGACATTCTGTACTAAAGGTCAGATGACAAAGCACATGATATCCCACACTGGTGCTCAACCTTTTAAATGTGAGGAGTGCGGCGCTGGCTTCACAATGCCCAGTTCATTGAAGAAACATAAAATGATACATCTTGGTGTTAAGGCATTTGAATGTGATACGTGCAGTAGACGATTTGTGAACAAGGACCACTTGAAGCGCCATTACCGCACGCACACAGGTGAAAAACCATTTCAGTGCAAATTCTGCGAGAGATCATTTGCGCAAAGTAATGATTTGATAAAGCATACGAGGCTACATGTTGGGCAAAATATTTATGAATGTACAGTCTGCCTGGCGAAATTCAGACTAAAGAGTGAACTAAAGCAACATTATCCAATACATTACGTTAGCAATGAAACACCAATATTCCTCAACATTGGGCAAAAATACTTGAGTCCAGTTGCAGTACCAAAGGATAACAATAAAATCACACAAAATGAAGACAACACTATAACGATATCGTACAATGATATTTTAGAGTGCACGAAGAATACTTCTATTGATAGATTAATGACCTTCTCGGACTTCGGTGCGCTCGATTCAACGCGCAATCCAAGAGAAAAAAACACGAAACTTGTAATGCCCACGTGA
- Protein Sequence
- MSNLESICLTCLSDENSLEDVYLPLIAEEHRHISLLDALKSCVPSQIIFSDNIPNKICDKCKNLLQISYSFQLQVLRSHEKLNELKQQESIKIKLELGELKLENDAEDTKEELFTDDDNDGSHNDDYELCSEPLKTEDENIENVLLNKQTYLCDRCTKVYHSKEEFDIHLCVLENRRPCPICNKLLKTESYEKHYKKHIKKFECNICLKQFKNEKLLLKHNLTHVEIEEVKTNKEGLKCERCELSFTNIRLLNTHLRRHELERLKCIFQCDMCEKEFSTKSILRRHVKLHSKDKKYKCIKCPKSYSRRDQLTDHLNTHDGVKPNVCSYCNKAFSQLCNLKDHIRTHTGETPFLCSECGKGFNNSSNLRQHIIRHTGVKPFSCILCPKTFCTKGQMTKHMISHTGAQPFKCEECGAGFTMPSSLKKHKMIHLGVKAFECDTCSRRFVNKDHLKRHYRTHTGEKPFQCKFCERSFAQSNDLIKHTRLHVGQNIYECTVCLAKFRLKSELKQHYPIHYVSNETPIFLNIGQKYLSPVAVPKDNNKITQNEDNTITISYNDILECTKNTSIDRLMTFSDFGALDSTRNPREKNTKLVMPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -