Ttri011463.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992334.1:2225249-2230233[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0027 0.15 12.8 0.3 1 23 49 72 49 72 0.94 2 18 0.048 2.7 8.9 1.9 3 23 99 120 98 120 0.94 3 18 0.16 9 7.2 4.3 1 22 142 163 142 165 0.89 4 18 9.2e-05 0.0052 17.4 0.7 3 23 172 192 171 192 0.99 5 18 0.11 6.2 7.7 0.8 2 23 226 248 225 249 0.95 6 18 0.00058 0.033 14.9 2.1 1 23 253 275 253 275 0.99 7 18 9.2e-07 5.2e-05 23.7 0.4 1 23 281 303 281 303 0.97 8 18 8.1e-06 0.00046 20.7 1.9 1 23 309 331 309 331 0.98 9 18 2.2e-05 0.0012 19.4 0.4 1 23 337 359 337 359 0.99 10 18 0.019 1.1 10.1 0.6 1 23 402 425 402 425 0.89 11 18 0.048 2.7 8.9 1.9 3 23 452 473 451 473 0.94 12 18 0.098 5.5 7.9 1.7 1 23 496 519 496 519 0.91 13 18 2.2e-05 0.0012 19.4 4.2 3 23 526 546 524 546 0.95 14 18 0.045 2.6 9.0 0.9 2 23 580 602 579 603 0.96 15 18 0.00057 0.032 14.9 2.3 1 23 607 629 607 629 0.99 16 18 9.2e-07 5.2e-05 23.7 0.5 1 23 635 657 635 657 0.97 17 18 5.1e-06 0.00028 21.4 1.8 1 23 663 685 663 685 0.98 18 18 0.00035 0.02 15.6 0.4 1 23 691 713 691 713 0.98
Sequence Information
- Coding Sequence
- ATGGATACAATTTGCATTACAAATCCACACCATGATATTTCTTTGTTTGCAGATTGGCGTCCAAAAACGAAGCAGCTTCGTTATTTATTCACGAACGTTTTATCACGGTCGACTGGTACGCCTTTTAAATGGCGTACGAGCAAATTTGCGTGTTTGTATTGCAAGTTAGCTTTCTTTAAATGGGCAGATTTCAAAACCCATATGGCCCTTGTTCACATTGACGTAAATTACGAGGCAACATTTGAAAAAATCTCCAATGAACACTTCATTTGTATTGATATTAAAAATAATAATTGTAGGGTATGTAGTAAACAATTCGAGCATGTAGACCAATTTATGCAACATCTTAAAGATGAACATGATTGTAATTTTGAACGTGACTATCGTGGGCATGTACTTGCATTTATTATTAACGATTCAAACTTTGAATGCGCTTATTGTCATCTTACATTTGAAGAGTATCAACACCTTTATAAGCATGCATTCCAAAACCATTTCACCCACAAACTTCTCTGTCAGTATTGCGGTAAAGGATTTGAAAATAGACTTTGGTATCGCAACCATATAAAGACACATAATAACGAAGTTTTCAAATGTGATCCATGCAATATTATATTTTCCACTTATTCCAAACACAGGTACCACTTTATAGAAGTGCACAAAAAGAGAACTGTCAAATGCTCGGAATGTAACGAGTTGTTTGCTAATGCAACATTGAAAAGATTACACGAAAGGTCTATTCACCATAAAAATTGTTTCAAATGCGATGTTTGCTCGAAAGAGTACGCTAGAAGACTGTCTTTGAAGTACCACAAAAATACACACACTAAAGAAATTCAGTATCCATGCCGCAATTGTGATAAAGTCTTTTACAGGAAATCGAATTTGATTTCTCATATAGTAGTACATTCCGATGATAAACCATTCGTATGTGATTATTGCATGAAAAAGTTTTCATCTAAAACGTATTTGGAAAAACATATTAGGATCCACACAAACGATAGGAGATATGTATGTAAAGTATGCGGTGATGCCTTCATACAATCTACCAGCTTGAAATTGCATATGAAGAAACATGCTAAGTTAGATAAGATTGGGGCAAAATATATCTATTGGAGTTTCAAATTAAAGCAGCTACGTCATTTATTAAGTAATGTTTTATCACTATCAACTGCAACACCGTTTAAGTGGCGTACAAGAAGATTTGCATGCATACATTGCAAACTAACCTTCGTAAAATGGACAGAATTAAAAACACACGTGGACGTTGATCACATTCACGTAGATTACTCAAGAACATTAAAAAATATCGATAATGAATACTACCTTTTTTTACAAATTAAAAATAATAATTGTAGGGTATGTAGTAAACAATTCGAGCATGTAGACCAATTTATGCAACATCTTAAAGATGAACATGATTGTAATTTTGAACGCGATTATCGGGAGCATATATTTCCGATTATTATTAATAATGATTCAAACTTTGAATGCGCCTTTTGTAATCTTACATTTGATGAGTATAACAACCTCTACAATCATTACTTCGAATTTCATTTCACCAACAAACATCTCTGCCAGTATTGCGGGAAAGCATTTACGAGTAAAAGTTGGTTACATAGCCATACAAAAATTCATAAAGGCCGAGTTTTTAAATGCGATCCATGCAATATAATATTTCCTACCTTCGGCAAACATAGATACCATTTTCTAGAAATGCACAAAGAGAGAACTGTCAAATGCTCGGAGTGTAGCGAGTTGTTTGCTAATGCATCATTGAAAAGATCACACGAAAGGTCTATTCACCATAAAAATTGTTTCAAATGCGATGTTTGCTCGAAAGAGTTCGCTAAAAGACTGTCTTTGAAGTACCATAAAAATACACATACTAAGGAAATTCAGTATCCATGCAGCAATTGTGATAAAGTCTTTTACAAAAAATCGAATTTGAATTCTCATATAGTAGTACATTCTGATGATAAACCATTCGTATGTGATTATTGCACGAAAAAGTTTTCAATTAAAAGGTATTTGGAAAAACATATTAGGATCCACACAAACGATAGGAGATATGTATGTAAAGTATGCGGTGATGCCTTCATACAGACTACCAGCTTAAAATTGCATTTGAAGAAACATGCTAAGCTTAGAGTAAGAATATAA
- Protein Sequence
- MDTICITNPHHDISLFADWRPKTKQLRYLFTNVLSRSTGTPFKWRTSKFACLYCKLAFFKWADFKTHMALVHIDVNYEATFEKISNEHFICIDIKNNNCRVCSKQFEHVDQFMQHLKDEHDCNFERDYRGHVLAFIINDSNFECAYCHLTFEEYQHLYKHAFQNHFTHKLLCQYCGKGFENRLWYRNHIKTHNNEVFKCDPCNIIFSTYSKHRYHFIEVHKKRTVKCSECNELFANATLKRLHERSIHHKNCFKCDVCSKEYARRLSLKYHKNTHTKEIQYPCRNCDKVFYRKSNLISHIVVHSDDKPFVCDYCMKKFSSKTYLEKHIRIHTNDRRYVCKVCGDAFIQSTSLKLHMKKHAKLDKIGAKYIYWSFKLKQLRHLLSNVLSLSTATPFKWRTRRFACIHCKLTFVKWTELKTHVDVDHIHVDYSRTLKNIDNEYYLFLQIKNNNCRVCSKQFEHVDQFMQHLKDEHDCNFERDYREHIFPIIINNDSNFECAFCNLTFDEYNNLYNHYFEFHFTNKHLCQYCGKAFTSKSWLHSHTKIHKGRVFKCDPCNIIFPTFGKHRYHFLEMHKERTVKCSECSELFANASLKRSHERSIHHKNCFKCDVCSKEFAKRLSLKYHKNTHTKEIQYPCSNCDKVFYKKSNLNSHIVVHSDDKPFVCDYCTKKFSIKRYLEKHIRIHTNDRRYVCKVCGDAFIQTTSLKLHLKKHAKLRVRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -