Ttri011794.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- znf711
- Assembly
- GCA_905220615.1
- Location
- HG992319.1:242697-244307[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.02 1.1 10.1 0.0 2 23 143 164 142 164 0.97 2 13 5.2e-07 2.9e-05 24.5 5.4 1 23 170 192 170 192 0.98 3 13 0.0097 0.55 11.1 0.1 2 23 212 233 212 233 0.98 4 13 1.3e-05 0.00072 20.1 3.9 1 23 239 262 239 262 0.97 5 13 3.2e-05 0.0018 18.9 0.1 1 23 272 294 272 294 0.97 6 13 0.0039 0.22 12.3 3.3 1 23 300 322 300 322 0.97 7 13 1.4e-05 0.00077 20.0 0.4 1 23 328 350 328 350 0.97 8 13 3e-06 0.00017 22.1 4.3 1 23 356 378 356 378 0.98 9 13 2.8e-07 1.6e-05 25.4 0.9 2 23 385 407 384 407 0.96 10 13 0.32 18 6.3 0.3 3 23 414 431 412 431 0.75 11 13 0.00017 0.0095 16.6 0.9 1 23 437 460 437 460 0.93 12 13 0.032 1.8 9.4 0.9 1 23 466 491 466 491 0.94 13 13 1.6e-05 0.00092 19.8 2.0 1 23 497 520 497 520 0.96
Sequence Information
- Coding Sequence
- ATGGAACCCAAGATTTGTAGATTGTGTCTTACTAGTGTTGGCGTCATACCATTATTTCAAGAAAAAGTCCTTATTACCAGAATAGCAGAAACTGTGCCAGGTGTGAGCGTGATCGAGAACGATGGATTCCCCGATCATATATGTAGTCCTTGTGAATCAGAGTTGACGATCGCCTACTGTTTCATAAAGAAATGCCAAGCCTCAGACAAAGCGCTGCGAGAGTTGCAGCAAGTGGCGGCCGCGTGCGTCGACGATGTAGAAGAAAAGTTAGATATAGATATAAAAGATGAGAGCGAAGATGTTTATCAGGATGCACCATTTTTGCATAGATCACCATCGCCTAGCGCAGAGGAGGAGGTGGTGGATTCGAGGCCTAAAGTGAAACATAAGAAACCGACGGAGCAGCACAAACACATGGCAAAAGTTGAATGCAACGAGTGCGGGCTCAGAATGGTGAGCGTCGCTGCACTGAACATACACAAGCGGACGCACACAGGAGAGAAGCCGTTTGAATGCCAACATTGCGACAAATGTTTCAGCAGAGAGGCCAACCTCACGAGGCACTTGAAATTGCACATCAGAGGAAGAAAGCGATACACAAGGAAAGTTAAGATTGAAAAGTTCACACCAGAGCAATGCGTCATTTGCGGGTTGTTATTGAGAAGTCCATCAGCAATGAAGATACATGCACGCACACACACGGATGAGAGACCATACAAATGCGACTCATGCGAGAAGACATTCACAACAAAGGGATGCTTGAAGAGACACGTGGAGACCAACCACTTGCAGCCAGGAGAGAGGATTAGGAGATTCATATGTGAGGTGTGCGGAAGGAGCTTCTACAGGAAAGCCGATATAATTGTGCACATTGGCACACACACTGGGGAGAAGCCACACTGTTGCCCATATTGTCCAATGAGGTTTCTGCAAATATCATCACTGATACGTCACAAAAGAGTGCACACGGGTGACAGGCCGTTCAGTTGTCCCGTTTGTAACAAAAGATTTGCTGACAGATCACTGGTCTCCAAACACTTGACCGTGCACAGTGATGTGCGCAACTTCAAATGCCACATGTGCAGCAAGGCATTCAAGAGCAGCTCATCATTGAGAGCGCATTTCCGCTTGCACACTAACGGCAAAGACATTGTGTGCAGTTATTGCGGATTGACATTCTCCACCAAAGGCAACCTAAAAACACACACGAGGAGATTACATTCAGAGAAGTCCGGCCAGTGCACCGTGTGCATGAAGCCATATGCCAACTTGGAGGAGCACATGCGGAAGCACACGGGGGAGAAACCATTTGTGTGTTCATTATGCAACCGTGGCTTCAGCAGCAAAGTTAGTTTGTCATCGCACATATCATTCAAACATGAGAACAGTCACAAATATAAGTGTTCTATTGGTGACTGTACTAAAACATTCCCAATTCCATCCATGTTGGAGTTCCATTTGCACAAACAACACACAAACCACACACCGCACGTGTGCCAATATTGTTCAAAGGGCTTCTTCAGAGCCAGCGATCTCAGCAGGCACTTGAAAGTGTCACACACGGATGTGCATCATAATATATTAGAGAAAATTAAATCACCAATTGACTGA
- Protein Sequence
- MEPKICRLCLTSVGVIPLFQEKVLITRIAETVPGVSVIENDGFPDHICSPCESELTIAYCFIKKCQASDKALRELQQVAAACVDDVEEKLDIDIKDESEDVYQDAPFLHRSPSPSAEEEVVDSRPKVKHKKPTEQHKHMAKVECNECGLRMVSVAALNIHKRTHTGEKPFECQHCDKCFSREANLTRHLKLHIRGRKRYTRKVKIEKFTPEQCVICGLLLRSPSAMKIHARTHTDERPYKCDSCEKTFTTKGCLKRHVETNHLQPGERIRRFICEVCGRSFYRKADIIVHIGTHTGEKPHCCPYCPMRFLQISSLIRHKRVHTGDRPFSCPVCNKRFADRSLVSKHLTVHSDVRNFKCHMCSKAFKSSSSLRAHFRLHTNGKDIVCSYCGLTFSTKGNLKTHTRRLHSEKSGQCTVCMKPYANLEEHMRKHTGEKPFVCSLCNRGFSSKVSLSSHISFKHENSHKYKCSIGDCTKTFPIPSMLEFHLHKQHTNHTPHVCQYCSKGFFRASDLSRHLKVSHTDVHHNILEKIKSPID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -