Ttri010550.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:4487683-4510333[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.041 2.3 9.1 4.3 2 23 466 487 465 487 0.97
2 14 3.8e-06 0.00021 21.8 0.4 1 23 493 515 493 515 0.99
3 14 3e-05 0.0017 19.0 0.1 1 23 521 543 521 543 0.99
4 14 1.7e-06 9.7e-05 22.9 1.1 1 23 549 571 549 571 0.99
5 14 0.0037 0.21 12.4 0.4 1 23 577 599 577 599 0.99
6 14 0.00023 0.013 16.2 1.4 1 23 605 627 605 627 0.98
7 14 5.1e-05 0.0029 18.2 0.8 1 23 633 655 633 655 0.98
8 14 0.00079 0.044 14.5 2.3 1 23 661 683 661 683 0.99
9 14 8.5e-06 0.00048 20.7 2.7 1 23 689 711 689 711 0.99
10 14 0.0022 0.12 13.1 1.4 1 23 717 739 717 739 0.99
11 14 0.0002 0.011 16.4 0.9 1 23 745 767 745 767 0.99
12 14 0.00039 0.022 15.4 0.5 1 23 773 795 773 795 0.99
13 14 9.1e-05 0.0051 17.4 0.6 1 23 801 823 801 823 0.99
14 14 7.4e-06 0.00041 20.9 0.6 1 23 829 851 829 851 0.99

Sequence Information

Coding Sequence
ATGCCGAAAACAAATGCAGAAGATTGTTGCGATTATCGAAAAATGGAAAACAAGATTAAAATTTCAACGGAACGTGTTCGTAAATTCCGTGCACGCCGAAAAGCGTTATTGAATTTGAAAAATGATAGTTGTAATACGCATATTGGTGATTTTACTGCTCAAAACAATAAAAGTGATCATAGTCATCATAAAAATCCAAAATTGCTGAATGAATTGGAGATCCAATCGGAACACTTGGTGAGTAATATATTTAAATATAACAATACATTGCCAATCAAACAGAGAGTGGAGGTTGCTAGAAAGGTTAAGGATCGCTACTTGGAAGGCAAGCCAGTGAGCCAGGAGACAGTCTCTCAATTAGTGCAGAACCATCATGACTACACAAATAATTCCCGTAAAACATTAACTATGGTAAAATTAAAAAATATAAACATACATAATGATTTGAATAAAAGTGACGAAGAGGATATTTTAGAGCTAGATCAGGAAGCTACTGGCGTATCTATAAAACTTGAGGAATATGGAGAGACTGAATTTATTGAGAACCATCATGACTACACAAATAATTCCCGTAAAACATTAACTATGGTAAAATTAAAAAATATAAACATACATAATGATTTGAATAAAAGTGACGAAGAGGATATTTTAGAGCTAGATCAGGACGCTACTGGCGTATCTATAAAACTTGAGGAATATGGAGAGACTGAATTTATTGAGAACCATCATGACTACACAAATAATTCCCGTAAAACATTAACGATGGTAAAATTAAAAAATATAAACATACATAATGATTTGAATAAAAGTGACGAAGAGGATATTTTAGAGCTAGATCAGGACGCTACTGGCGTATCTATAAAACTTGAGGAATATGGAGAGACTGAATTTATTGAGAATTATCACACTGACCATTCCGCTTTGCTGAATGATAAGTGTGATATTTATGTGAATACAATCAAAAGTGAAAATGGATCAGTGCAAGATGAGCATTCAATGAATGAAGACACTCCGCTGATAGAGCTAGGAGAATGCGCAAATATAAAACGATCGGGTTCTGCTTCGCCATGCGGGGATGTAGAACCAACATGGCGCCCGCGAATGTCATCAAATGAACAATTACCTACATATAGAGAAGAGGAGTTGATTGAAAATTGTCAATCCGAAAAAATATGTAAGAATAATATCTACAATGAAGTAACAGAAGAATATAAATTAATAAAAAAGGAAAACGTTACTTGTACCAGTTCAGAAGTTAATACAAACATAGAAGAAAGATCAATTAAATTATCACCTAAGAAATTAGGCCTCCAATATCTATGTAATAAGAAAAATACATTTATGGGGGAAGGATGTTTAGAAACTCAAATTAGAAAATTGACCAAAGAACCACTTAAATGTGATTTATGTCAATTTAAGACAACGCACAAAAATATATTAAAAAGACACATTCGTACTCATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATGAGGTAAATCGAAAAAGTGCATTAGTAAAACATATTCGTACACATACAGGTGAAAAACCATATAAATGCGATTTATGTGATTATAAGGCAACACAAAAAGGTGCATTAGTAGCACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGGTTTGTGATTATAAGGTAGTTCATAAAAGTGCATTAATAAGACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTTTGTGATTTTAAGGCAATTTATAAAAGTGTATTAGTAATACACATTCGTACACATACAGGTGAAAAACCATATAATTGTAAGTTATGTGATTATAAGGCAATTCATAAAAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAATTGTAAGTTATGTGATTATAAGGCAAAACAAAAAAGTGCACTAGTATCACACATTCGTACACATACAGGTGAAAAACCATATAAATGCAAGTTATGTGATTATAAGGCAAATCAAAAATATGCATTAGTAAACCATATTCATACACATACAGGTGAAAAACCATATAAATGTAAGTTATGTGATTATAAAACAAAATCATATAGTTCATTAGCAAAACACATTCGTACACATAGAGGTAAAAAACCATTTAAATGCGAGTTATGTGATTATAAGGCCACAGAAAAATGTGCACTAGTATCACACATTCGTACACATACAGGTGAAAAACCATATAAATGTAAGTTGTGTGATTATAAGGCAACAGCAAAAAGTACATTAGTATCACACATTCGTACACATACAGGTGAAAAACCATATGAATGTGAGTTATGTGATTATAAGGCAAATCTAAAATATTCATTAGTAAAACATATTCGTACACATACAGGGGAAAAACCATATAAATGTAAGTTATGTGATTATAAGGCAATTTATAAAAGTGCACTCGTATCACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTATGTGATTATAAGGCAACTCGAAAAGATGCATTAGTAAAACATATTCGTACACATACAGATAAAAAACCATAA
Protein Sequence
MPKTNAEDCCDYRKMENKIKISTERVRKFRARRKALLNLKNDSCNTHIGDFTAQNNKSDHSHHKNPKLLNELEIQSEHLVSNIFKYNNTLPIKQRVEVARKVKDRYLEGKPVSQETVSQLVQNHHDYTNNSRKTLTMVKLKNINIHNDLNKSDEEDILELDQEATGVSIKLEEYGETEFIENHHDYTNNSRKTLTMVKLKNINIHNDLNKSDEEDILELDQDATGVSIKLEEYGETEFIENHHDYTNNSRKTLTMVKLKNINIHNDLNKSDEEDILELDQDATGVSIKLEEYGETEFIENYHTDHSALLNDKCDIYVNTIKSENGSVQDEHSMNEDTPLIELGECANIKRSGSASPCGDVEPTWRPRMSSNEQLPTYREEELIENCQSEKICKNNIYNEVTEEYKLIKKENVTCTSSEVNTNIEERSIKLSPKKLGLQYLCNKKNTFMGEGCLETQIRKLTKEPLKCDLCQFKTTHKNILKRHIRTHTGEKPYKCELCDYEVNRKSALVKHIRTHTGEKPYKCDLCDYKATQKGALVAHIRTHTGEKPYKCEVCDYKVVHKSALIRHIRTHTGEKPYKCEFCDFKAIYKSVLVIHIRTHTGEKPYNCKLCDYKAIHKSALVTHIRTHTGEKPYNCKLCDYKAKQKSALVSHIRTHTGEKPYKCKLCDYKANQKYALVNHIHTHTGEKPYKCKLCDYKTKSYSSLAKHIRTHRGKKPFKCELCDYKATEKCALVSHIRTHTGEKPYKCKLCDYKATAKSTLVSHIRTHTGEKPYECELCDYKANLKYSLVKHIRTHTGEKPYKCKLCDYKAIYKSALVSHIRTHTGEKPYKCELCDYKATRKDALVKHIRTHTDKKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-