Ttri010544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:4386092-4406128[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.35 20 6.2 1.6 2 23 366 387 365 387 0.97
2 15 3.2e-05 0.0018 18.9 0.4 1 23 393 415 393 415 0.99
3 15 8.3e-05 0.0047 17.6 0.3 1 23 421 443 421 443 0.99
4 15 4e-05 0.0022 18.6 0.6 1 23 449 471 449 471 0.99
5 15 6.2e-06 0.00035 21.1 0.7 1 23 477 499 477 499 0.99
6 15 4e-05 0.0022 18.6 0.6 1 23 505 527 505 527 0.99
7 15 0.00048 0.027 15.2 0.1 1 23 533 555 533 555 0.98
8 15 3.2e-05 0.0018 18.9 0.4 1 23 561 583 561 583 0.99
9 15 3.2e-05 0.0018 18.9 0.4 1 23 589 611 589 611 0.99
10 15 3.8e-05 0.0021 18.7 0.7 1 23 617 639 617 639 0.99
11 15 0.00063 0.035 14.8 0.1 1 23 645 667 645 667 0.99
12 15 1e-05 0.00059 20.4 1.1 1 23 673 695 673 695 0.99
13 15 0.00015 0.0086 16.7 0.3 1 23 701 723 701 723 0.99
14 15 6.9e-05 0.0039 17.8 0.9 1 23 729 751 729 751 0.99
15 15 0.28 16 6.5 2.6 1 23 757 780 757 780 0.96

Sequence Information

Coding Sequence
ATGAACGATATATTATGTGCTACATGTTTGGCGACTGATCGCAGTTTAATAACTTTAAAGTCTGACATTTTTGGTTTATTACAATATTTGATGCTGCAAAAAGGATATGATGAATTGAAAATAACTGACCGAGTATGTTGGGAATGTTTTGCACAATTGAACAATGTTAGAAAATTCCAGAATAAAGCATTTGATAGTTTACGAAGACTACAAGAATATTGTTATAAAATGGAGAACCATCCTGAGTACACAAATATTTCATGTAAAACATTAACTAGAGTAAAATTAAAAAATATAAACATACATAATGATTTGAATGAAAGTGATGAAGAGGATATTTTAGAGCTAAATCAGGATGCTACTGATGTATCTATAAAACTTGAGGAATATGGAGCGACTGTGTTTATTAAGAACCATCATGAGTACACAAATATTTCATGTAAAACATTAACTAGAGTACAATTAAAAAATATAAACATACATGATGATTTGAATGAAAATGATGAAGAATATGATGAAGAGGATATTTTAGAGCTAAATCAGGATGCTACTGATGTATCTATAAAACTTGAGGAATATGGAGAGACTGTGTTTATTGAGAATAATCACACTGACCATTCCGCTTTGCTGAATGATACGTGTGATATTTATGTGAATACAATCAAAAGTGAAAATGGATCAGTGCAAGATGAGCATTCAATGAATGAAGACACTCCGCTGATAGAGGTAGAGGAATGCGTAAATATAAAACGATCGGGTTCTGCTTCGCCATGCGGGGATGTAGAACCAACATTGCGCCTGCAAATGTCATCAAATAAACAAAAACCTACAGATAGAGAAGAGGAGTTGATTGAAAATTGTCAATCCGAAAAAATATGTAAGAAAAGGACATACAATGAAGTTACAGAAGAATGCATATTAGTAGAAAACGTTACTTGTACAAATTCAGAAGTTCATACAAACATAGAAAAAAAATCAATTAAATTATCACCTGAGAAATTAGGTTTCCGATATCTATTCAATTATAAAAAAATACATATAGTCGAAGAAAGTTTAGAAACTCAAATTAGGAAATTGACTGCTAAAGAACCACTTAAATGTGATTTATGTGAATTTAAGACAACGCACAAAAATATATTAATAGGACACATACGTACACATACAGGTGAAAGACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGTAAAAAGTGCATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTAATTATAAGGCCACAAAAAAAAGTGCATTAGTAGCACACATTCGTATACATACAGGTGAAAAACCATATAAATGCGAGTTATGCAATTATAAGGCAACAGGAAAAAGTGATTTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTTTGTGATTATAAGGCCACAGATAAAAGTGCATTAGTAAGACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGCAATTATAAGGCAACAGGAAAAAGTGATTTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGTAAAAAGTGCATTAGTAACACACATTCGTGGACATACAGATGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGTAAAAAGTGCATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGTAAAAAGTGCATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATGAATGTAAGTTATGTGATTATAAGTCAATACAAAAAACTGCATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCCACAGAAAAAAGAGCATTAGTAGCACACATTCGTATACATACAGGTGAAAAACCATATAAATGTGAGTTATGTGATTATAAGGCCACAAAAAAAAGTGATTTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGTAAAAAGTGCATTAGTAACACACATTCGTAGACATACAGATGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAAAACAAAAAAATGCATTAGTAAAACACATTCGTAGACATACAGATGAAACACCATATAAATGCGAGGTATGTGATTATAAGGCAACACTTAAGTGTAGCGTAACGAGGCATTTTAATAGTATACATAAAATGATAAAAATAATTTATGATTTCCTAAAGTCCGGAGACTTAGGCCAAAGTTTACATTCTATTTCTAGCCATAATTATAATGTATACTTTCTTATGTCTGTTACGCTGACATACTCCTCCCCCTTAAGTGAGAGGTGTACCCGGGATTGCGACGATGGTGGTTGGAGAGGATCTTCAGCCCCACGTTGCTGTCCTAAGGTTGAAGCTGATCGTTTGGGAGCCCACCAGCCCCCCTAG
Protein Sequence
MNDILCATCLATDRSLITLKSDIFGLLQYLMLQKGYDELKITDRVCWECFAQLNNVRKFQNKAFDSLRRLQEYCYKMENHPEYTNISCKTLTRVKLKNINIHNDLNESDEEDILELNQDATDVSIKLEEYGATVFIKNHHEYTNISCKTLTRVQLKNINIHDDLNENDEEYDEEDILELNQDATDVSIKLEEYGETVFIENNHTDHSALLNDTCDIYVNTIKSENGSVQDEHSMNEDTPLIEVEECVNIKRSGSASPCGDVEPTLRLQMSSNKQKPTDREEELIENCQSEKICKKRTYNEVTEECILVENVTCTNSEVHTNIEKKSIKLSPEKLGFRYLFNYKKIHIVEESLETQIRKLTAKEPLKCDLCEFKTTHKNILIGHIRTHTGERPYKCELCDYKATVKSALVKHIRTHTGEKPYKCELCNYKATKKSALVAHIRIHTGEKPYKCELCNYKATGKSDLVKHIRTHTGEKPYKCEFCDYKATDKSALVRHIRTHTGEKPYKCELCNYKATGKSDLVKHIRTHTGEKPYKCELCDYKATVKSALVTHIRGHTDEKPYKCELCDYKATVKSALVKHIRTHTGEKPYKCELCDYKATVKSALVKHIRTHTGEKPYECKLCDYKSIQKTALVKHIRTHTGEKPYKCELCDYKATEKRALVAHIRIHTGEKPYKCELCDYKATKKSDLVKHIRTHTGEKPYKCELCDYKATVKSALVTHIRRHTDEKPYKCELCDYKAKQKNALVKHIRRHTDETPYKCEVCDYKATLKCSVTRHFNSIHKMIKIIYDFLKSGDLGQSLHSISSHNYNVYFLMSVTLTYSSPLSERCTRDCDDGGWRGSSAPRCCPKVEADRLGAHQPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01452573;
90% Identity
-
80% Identity
-