Ttri010369.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:2344734-2353186[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00028 0.016 15.9 0.8 2 23 308 329 307 329 0.97
2 19 0.00018 0.01 16.5 0.9 1 23 335 357 335 357 0.99
3 19 0.00039 0.022 15.5 1.3 1 23 363 385 363 385 0.99
4 19 0.00038 0.021 15.5 0.7 1 23 391 413 391 413 0.99
5 19 3.5e-05 0.002 18.8 1.3 1 23 419 441 419 441 0.99
6 19 7.1e-05 0.004 17.8 1.0 1 23 447 469 447 469 0.99
7 19 0.00044 0.025 15.3 0.4 1 23 475 497 475 497 0.98
8 19 0.063 3.5 8.5 0.5 2 23 504 525 503 525 0.96
9 19 4.6e-05 0.0026 18.4 1.7 1 23 531 553 531 553 0.99
10 19 0.088 4.9 8.1 0.8 1 23 559 581 559 581 0.94
11 19 0.00041 0.023 15.4 2.7 1 23 587 609 587 609 0.99
12 19 5.6e-05 0.0031 18.1 0.4 1 23 615 637 615 637 0.99
13 19 0.00018 0.01 16.5 1.0 1 23 643 665 643 665 0.99
14 19 0.0021 0.12 13.2 1.8 1 23 671 693 671 693 0.99
15 19 0.00038 0.021 15.5 0.3 1 23 699 721 699 721 0.99
16 19 0.15 8.2 7.4 0.6 1 23 727 749 727 749 0.96
17 19 0.00037 0.021 15.5 1.3 1 23 755 777 755 777 0.99
18 19 0.00076 0.043 14.5 0.2 1 23 783 805 783 805 0.99
19 19 0.00013 0.0071 17.0 0.9 1 23 811 833 811 833 0.99

Sequence Information

Coding Sequence
ATGAGAGACGTATTATGCGCTACATGTTTAGCTATAGACCGAAATTTAATAACTTTGGGGAAGTCTCCACTGTTTGATATATTGGAATATTTAATGTTGCAAAAAGGATATAATGAATTAAGAATAACTGACAAAGTATGTTGGGAATGTTTTGCACAATTAAACAATGTTAGAAAATTCCAGAATAAAGCATTTGATAGTTTACGAAGACTACAAGGGTATTGTAATAAAATAGAGAACCTTAATGAGATTACAAATAATCCTTTATCAACATTGAGTGTAACAAATTTAAAAAATATAAATTTACACAATGATTTAAATAATAGTGATAAAAAATATAAAGAAGAGTTTATTTTAAAGTTGGATGCCACTGAAGTAAAACTTGAAGAATGTGGAGAGGATATGTTTAGTGAGAATAATCTAGGCATTTGTGGAAAAATTGAACCTTTAAATAATGTGAAGTATGAGTGTGAAGGTGATGTAGATTATATTGATGTCAATACGAATGAAAATGATAATGGAGTAGTAAAAGATGAGCAATTAATGTATGGAGTACAACTTGACGATCCTCTGCAGACACGGGTAAATGATTTCGGAAATGTACAAGTGGGTTATTCTTCGCCGTGCGGTGAAGTAGATCCAACATGGCGTCTACAAATGTCATCGAATGAACAATTACCCACTAGAGAAGAGGAATTGAATAGAACTTGTCATTATGAAAAAAAGATTAAGAAAAGAAGCCACAATGAAGTAACTAAAGAATTCATTTTGAAGAAAGATGAAAACTTTGAAAAATGTAGCTTTACTAAATTACCACCTAAGAAATCGGACTTCCAACCACCATTCAAAAAGAAGAAATCACATGTAGGCGAAGAAAGTTCAAAAATACGAATTAGGAAATCGTCTGCTAAAGAACTACTCAAATGTGATTTATGTGAATATAAGACAATACGAAAATATGATTTAAAATCACACATTCTTACACATACAGGTGAAAAACCTTTTAAATGTGATTTATGTGAATATAAGGCTACAAATAAAAGTTTATTAGTAAGACATACTCGTATACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGAATATAAGGCTACAAATAAAAGTTTATTAGTAAGACATAATCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAAAAGATAAAGGTTTATTAGTAAGACATAATCGTACACATACAGGTGACAAACCTTTTAAATGTGATTTATGTGAATATGAGACAAAACAACAAGGTACTTTAAAAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTGTGTGATTATAAGGCAACAAATAACAGTGATTTAGTAAGACATAATCGTACACATACAGGAGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAAATATTAAAAGTAATTTAGTAAAACACATTCGTGCACATACAGGTGAAAAACTATTAAAATGTGAGCTATGTGATTATAAAGCAATAGAAAAAAGCACATTACTAAAACACTCTTTAAGACATACAGGTGAAAAACCTTTTAAATGTGAGCTATGTGATTACAAAGCAACAGATAGAAGTACATTACGAAAACACGTTCGTAGACATACAGGTGAAAGACCATTTAAATGTAATCTATGTGAATTTAAGGCACTACAAAAAGAGTCATTGAAAATACACATTAGTACACATTCAAGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAAAACATAAGCGCCTTCTAGTTAGTCATATTCGTACACATTCAGATGAAAGACCATTTAAATGTGACTTATGCGATTATAAGGCAAAAGATAAAGGTTCATTATTAATTCACATTCGTACACACACTGGTGAAAAACCATTTAAATGTGATTTATGTGAATATAAGGCAGTACGGAAAAGTTCATTGAGACTACACGTTCGTACACATACTGGTGAAAAACCATATAAATGTAAGCTATGTGATTTTAAAGCAATAGAAAAACGTAAATTACTAAAACATATTCGTACACATACAGGTGAAAGACCATTTAAATGTGATCTATGTGAATATAAGGCAAAAGAAAAAGATGCATTGATAAATCACATTCGTACACACACTGGTGTAAAAACATTTAAATGTGATCTATGTGAATATAAGGCACTGCGAAGAGAGTATTTAAAAGCACACGTTAGTACACATTCAAGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAAAATATAAGCGCCTTCTAGTTAGTCATATTCGTACACATTCAGATGAAAGACTATTTAAATGTGACCTATGCGAATATAAGGCAAAAGATGAAGGTTCATTATTAATTCACATTCGTACACACACTGGTGAAAAACCATATAAATGTGATTTATGTGAATATAAGGCAGTACGGAAAAGTTCATTGAGATTACACGTTCGTACACATACTGGTGCAAAACCAATTAAATAA
Protein Sequence
MRDVLCATCLAIDRNLITLGKSPLFDILEYLMLQKGYNELRITDKVCWECFAQLNNVRKFQNKAFDSLRRLQGYCNKIENLNEITNNPLSTLSVTNLKNINLHNDLNNSDKKYKEEFILKLDATEVKLEECGEDMFSENNLGICGKIEPLNNVKYECEGDVDYIDVNTNENDNGVVKDEQLMYGVQLDDPLQTRVNDFGNVQVGYSSPCGEVDPTWRLQMSSNEQLPTREEELNRTCHYEKKIKKRSHNEVTKEFILKKDENFEKCSFTKLPPKKSDFQPPFKKKKSHVGEESSKIRIRKSSAKELLKCDLCEYKTIRKYDLKSHILTHTGEKPFKCDLCEYKATNKSLLVRHTRIHTGEKPFKCELCEYKATNKSLLVRHNRTHTGEKPFKCELCDYKAKDKGLLVRHNRTHTGDKPFKCDLCEYETKQQGTLKTHIRTHTGEKPFKCELCDYKATNNSDLVRHNRTHTGEKPFKCELCDYKANIKSNLVKHIRAHTGEKLLKCELCDYKAIEKSTLLKHSLRHTGEKPFKCELCDYKATDRSTLRKHVRRHTGERPFKCNLCEFKALQKESLKIHISTHSSEKPFKCELCDYKAKHKRLLVSHIRTHSDERPFKCDLCDYKAKDKGSLLIHIRTHTGEKPFKCDLCEYKAVRKSSLRLHVRTHTGEKPYKCKLCDFKAIEKRKLLKHIRTHTGERPFKCDLCEYKAKEKDALINHIRTHTGVKTFKCDLCEYKALRREYLKAHVSTHSSEKPFKCELCDYKAKYKRLLVSHIRTHSDERLFKCDLCEYKAKDEGSLLIHIRTHTGEKPYKCDLCEYKAVRKSSLRLHVRTHTGAKPIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-