Ttri011409.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- Zeb1
- Assembly
- GCA_905220615.1
- Location
- HG992334.1:1814950-1822393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.00012 0.0069 17.0 1.4 1 23 25 47 25 47 0.97 2 32 1.3 73 4.4 0.0 3 23 73 94 71 94 0.92 3 32 7.6 4.3e+02 2.0 0.6 2 23 115 136 114 136 0.86 4 32 0.0047 0.27 12.0 1.0 1 23 140 162 140 162 0.96 5 32 0.0061 0.35 11.7 4.2 1 23 167 190 167 190 0.96 6 32 0.019 1.1 10.1 0.4 1 12 196 207 196 210 0.90 7 32 0.082 4.6 8.1 3.8 1 23 260 282 260 282 0.97 8 32 0.0014 0.08 13.7 2.5 1 23 345 367 345 367 0.99 9 32 0.00033 0.019 15.7 1.2 1 23 371 393 371 393 0.97 10 32 4 2.2e+02 2.8 0.9 1 23 398 421 398 421 0.93 11 32 0.019 1 10.2 0.9 1 23 427 450 427 450 0.98 12 32 0.0027 0.15 12.8 5.2 1 23 457 480 457 480 0.97 13 32 1.6e-06 8.9e-05 23.0 3.2 1 23 486 508 486 508 0.98 14 32 8.1e-05 0.0046 17.6 0.6 1 23 513 535 513 535 0.98 15 32 8.1 4.5e+02 1.9 0.2 1 9 541 549 541 556 0.79 16 32 0.021 1.2 10.0 0.1 2 19 586 603 585 605 0.94 17 32 0.005 0.28 12.0 0.5 2 23 633 654 632 654 0.96 18 32 0.069 3.9 8.4 9.6 1 23 674 696 674 696 0.98 19 32 0.13 7.3 7.5 0.3 1 23 700 722 700 722 0.95 20 32 0.0048 0.27 12.0 0.2 3 23 729 750 727 750 0.92 21 32 0.014 0.77 10.6 4.5 2 23 757 779 756 779 0.95 22 32 2.1e-05 0.0012 19.4 2.6 1 23 804 826 804 826 0.98 23 32 9.2e-05 0.0052 17.4 0.5 1 23 831 853 831 853 0.97 24 32 0.074 4.2 8.3 3.9 1 23 902 924 902 925 0.93 25 32 0.0021 0.12 13.2 0.9 1 23 996 1018 996 1018 0.98 26 32 0.0062 0.35 11.7 0.7 1 23 1022 1044 1022 1044 0.94 27 32 0.02 1.1 10.1 0.7 1 23 1049 1072 1049 1072 0.96 28 32 0.0013 0.075 13.8 1.2 1 23 1078 1101 1078 1101 0.97 29 32 0.00054 0.031 15.0 1.2 1 23 1108 1131 1108 1131 0.96 30 32 2.4e-05 0.0014 19.2 2.1 1 23 1137 1159 1137 1159 0.98 31 32 4.4e-06 0.00025 21.6 2.8 1 23 1165 1187 1165 1187 0.99 32 32 0.1 5.8 7.8 3.4 1 23 1193 1215 1193 1216 0.94
Sequence Information
- Coding Sequence
- ATGGAGAGGGAAAACGCTATCGTTGTCCTTGAATGTAGTAATGCAACGCCTTTTTGGTGGTTTAGCGACACGTTCGTTTGTCCATATTGCAAGAAGGCATTTCCAACTATATACATGTATCAGCGGCATTTTACCACACATTCTAGGTCTTTAAACGTTTTGTGGAAAAAGAAAAATGGTCAAGAGTACCTGAAAGTTGAAATAAGTAATCTAGCGTGCAATTTGTGCGGCGAGGAATTACCTCAATTAAACGATATGATACTCCATTTGAATTTTAAGCATAGTTTAGGACATAGAGATTATGGAGCTTGCCTTCTACCTTTTGTAATATCAGATGAAATTAAGTGTTGTTTATGTGAAGCTAAACCTTCTACTTTCTTGAATTTAATACGCCATATGGGTGTACATTATCAAAATTACCTTTGCGAGATTTGTGGCTCAGGATTCGTCGAAACGCACAAGTTGACGTCCCATCTAAAGACGCATAAAGTTGGTAGCTTCAAATGCAATATTTGTCCGAAAGTTTATAAAAGTAAAGAATTGTTGTATTGTCATAAAAAAACATCCCACTTAAATGGAAAGAGGCACCAGTGTCCACATTGCGGTGAAAGATTCACAACTTACGTAGCTAGAAGGCCACGGATAGCCGATGATGGCGACAAAATAAAAGTCGAAAGCAATTGGGCTTTGTCTAAATCAAAACGAATTGCTCGCACAGAATTTGTTAGCAAGCTTATGACATATACGACAGCCTATCCATTCCGATGGAGGCGTAATTTCACATGCTTCTTCTGCAACTCAAACTTTCACGATCCAAAAGATTTACGTCAACACACTGAGTCACACGAAAATGTCAAACAAATCATCTCAAACGAAGTTATTAATGTAGATTTTTATTTGGCTAAATGTAAAATTTGTGGTGTAGATATTAATGAGATTAGTATTTTAAAAAAGCATTTATCGAACGCACACGGAAAAGAATTAACTGTATCTATAGATGATGGTATATTTCCATTTAAACTAACCAAAATATTTCAATGTCAAATTTGCAATCAAAACTTCGAATATTTCCTAACCTTATTCAAACACATGAATTCACACTATACTAACTTTATATGCGAATTTTGCGGCAAAAGTTTCGCGACACAACAACGTAAAAACAACCATATTCGATTACACATAAAGGGCCCTTTCCCTTGTCGTTTGTGCAGCGAAAACTTCCAAAGTTACACCGAACGAGCCACGCATACCATTAAAAACCACTCACAGCCTCATAGATATAAATGTCCTATTTGCAACGATAACTTCGCTTCGTACTTCTCTAGGAACAAACACTTGAGTACAGTACATAACGAGGTTACAACGAAATATAATTGTCATTTGTGTAAGAAACAATTTGGTTCATCGAGTCACAGAACAGCACATATTAAAAGAGAACACTTAAGAGAAAAGAACTACATGTGTAATTACTGTGGTAAAAAATTCTGCGGCAAATCTGAGCTTAAAGAGCACATGATAAAACATGATGGGATAAAGTTCACGTGTGAGATTTGTTCGAAGCTCTATGCAACTCGGAAGAGTTTAAATATACACTTAAGGATTCATAATAATGACAAAAGGTTCTCTTGTAAGGAATGCGGTCAGCTGACCGAACGAAGAGAACAACGAATGAATTGGAGTAGGATGAAACATAACATTTTAACTATACTGGAAAATACGACCGCTTGCCCCTTTAGATGGCGTTTAAATTCCCTTATGTGTTTTTATTGCGATCTAAGATTTACAAATCTAGCAGAACTATATAACCACACACCATTAATACATAAAAATGTACAAAAATCATTCAAAGAATCCCGATGGGAGAGGCAACATGTGAAAGTAGATATATCAAAACTAATGTGTCTCATTTGCAACGAAAAGTTTCAACAGCTGGACGAAATAAAAACCCACTTGAAAACGCACGGGATAACCATTCATATGGGCTTCGATTTTCTTCCGTACAAGTTCAGTAAGCAATTATTTACTTGTCATTTGTGTGAGAAACTCTTTAATCGTTTCAACCATCTTACACACCACTACAATCAGCACTATCGTAACTTTGTATGCGACGTTTGCGGTGAACCGTTTCTAGAACGACGTTTTTTTGAGCAACACTTAAAACTGCATGTAAATAGACCGTCTATTTGCAAACGTTGCAATGAAGTTTTTCCAACGAACTCAGCCAAAAGGAAACACATTATAGCAGCGCATGGTGTTCGAGATATAATTCCTTGCCCGCACTGTGATGAACGGTTTTCACATACAAATCAAAAGTTCCACCATATGGCGAAAGTACATAATATTAAGAATAGTAATTGTCATTGTCCGTCTTGCCAAGGTACTAAGTCAGAAATGGACCAGCATAAGCCGTTTGAATGTGAGGAGTGTAAGAAGAAATTCTCCAAAAAAGAGTTACTAAGTCGACATAAAAAGATACATTTAGGTTTGAAGTTCGCCTGTGAAATCTGTCAGAAATTATACGCAAATAGGAAGTCATTAAAACGTCATTTAATGATTCATAGTGACGATAGGAGGTACGCATGTCAGGAATGTGGTGCAACAAAACGCGGTTTAGATTTACAAATAGATGCAATAATAAAACGTAACGCATGCACTATCATCGAGAATTCACATTTGATACCATTTAAATGGTTGAAAAACGCTTTTTTCTGTTTTTATTGCAACGAAAAATATATGAATCCCAAATTATTAAATCAACACACAACTTTACATCATTCTAACACAGAATTAACTGGCATAGTAAGCAAACTACGAAAATATGATCTAATTAAAGTCGATGTAACTAATTTAGCGTGTAATTTATGCGAGGAAAATAATAATGATATTAATTCATTAAAAAGTCATTTAATCAACACGCATAACAAAATAATCGATTTAAATTACCAAGATGGCGTTATTCCTTTTCGATTTGACAGCGATGGCCATTTCGTTTGCTACTTATGTCAAAGAGAATTTAATGTCTTTGTTACTTTAAATAATCATATGAATTCACATTTTCAAAATTATATTTGCTCAACTTGTGGCAAGGGATTTGCTACAATAAAACGGCTTCAATCTCATAATTACTCACACGTTAGAGGTAGATTCCCTTGTAATTTTTGCTCAAGGATCTTTCCTTCAAACGCAAATAGAGTCAACCACACGTTACGGTTTCATAAACAATCAAACATGTTCAAATGTCCCGATTGCAATGAGATTTTTAAGACATATTTGGCACGAAACAAACATAGACGATTGATGCACAACGTGACTGCTTTAGAATATCGCTGCCCTTTGTGCCCTAAAGTATTTTCTTTGAGCGGGAAAAGGACGCATCATATTAAACAAGTCCATATTAAAGAGAGGAATTACAGTTGTAAAGAATGTCAGTGGAAATGTTCCTCTAATTCTGAACTGCAAGAACATATGATTCGACATAACGGAGAGAAGGTTTACGAGTGTGAGGTGTGTAAGAAGAAGTACGCAAGGAAACATACTTTGAGAGAACATATGCGGATTCATAGCGGTGAAAGGCGATTCATTTGTTTTCTTTGTGGTGCCGCTTTCGTTCAGAATTGTAGTCGGAAGTATCATATGAAGGCTCATCACCCTGACCATAGTTCAAATTAA
- Protein Sequence
- MERENAIVVLECSNATPFWWFSDTFVCPYCKKAFPTIYMYQRHFTTHSRSLNVLWKKKNGQEYLKVEISNLACNLCGEELPQLNDMILHLNFKHSLGHRDYGACLLPFVISDEIKCCLCEAKPSTFLNLIRHMGVHYQNYLCEICGSGFVETHKLTSHLKTHKVGSFKCNICPKVYKSKELLYCHKKTSHLNGKRHQCPHCGERFTTYVARRPRIADDGDKIKVESNWALSKSKRIARTEFVSKLMTYTTAYPFRWRRNFTCFFCNSNFHDPKDLRQHTESHENVKQIISNEVINVDFYLAKCKICGVDINEISILKKHLSNAHGKELTVSIDDGIFPFKLTKIFQCQICNQNFEYFLTLFKHMNSHYTNFICEFCGKSFATQQRKNNHIRLHIKGPFPCRLCSENFQSYTERATHTIKNHSQPHRYKCPICNDNFASYFSRNKHLSTVHNEVTTKYNCHLCKKQFGSSSHRTAHIKREHLREKNYMCNYCGKKFCGKSELKEHMIKHDGIKFTCEICSKLYATRKSLNIHLRIHNNDKRFSCKECGQLTERREQRMNWSRMKHNILTILENTTACPFRWRLNSLMCFYCDLRFTNLAELYNHTPLIHKNVQKSFKESRWERQHVKVDISKLMCLICNEKFQQLDEIKTHLKTHGITIHMGFDFLPYKFSKQLFTCHLCEKLFNRFNHLTHHYNQHYRNFVCDVCGEPFLERRFFEQHLKLHVNRPSICKRCNEVFPTNSAKRKHIIAAHGVRDIIPCPHCDERFSHTNQKFHHMAKVHNIKNSNCHCPSCQGTKSEMDQHKPFECEECKKKFSKKELLSRHKKIHLGLKFACEICQKLYANRKSLKRHLMIHSDDRRYACQECGATKRGLDLQIDAIIKRNACTIIENSHLIPFKWLKNAFFCFYCNEKYMNPKLLNQHTTLHHSNTELTGIVSKLRKYDLIKVDVTNLACNLCEENNNDINSLKSHLINTHNKIIDLNYQDGVIPFRFDSDGHFVCYLCQREFNVFVTLNNHMNSHFQNYICSTCGKGFATIKRLQSHNYSHVRGRFPCNFCSRIFPSNANRVNHTLRFHKQSNMFKCPDCNEIFKTYLARNKHRRLMHNVTALEYRCPLCPKVFSLSGKRTHHIKQVHIKERNYSCKECQWKCSSNSELQEHMIRHNGEKVYECEVCKKKYARKHTLREHMRIHSGERRFICFLCGAAFVQNCSRKYHMKAHHPDHSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -