Ttri010364.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:2295070-2302785[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.022 1.2 10.0 1.7 1 23 112 134 112 134 0.99
2 23 3.2 1.8e+02 3.2 0.2 1 16 140 155 140 156 0.86
3 23 0.00012 0.007 17.0 0.6 1 23 160 182 160 182 0.98
4 23 0.0023 0.13 13.0 2.3 1 23 188 210 188 210 0.99
5 23 9.4e-05 0.0053 17.4 0.9 2 23 272 293 271 293 0.97
6 23 0.00013 0.0073 17.0 3.5 1 23 299 321 299 321 0.99
7 23 0.0054 0.3 11.9 2.2 1 23 327 349 327 349 0.99
8 23 0.0032 0.18 12.6 5.3 1 23 355 377 355 377 0.98
9 23 0.0054 0.3 11.9 2.2 1 23 383 405 383 405 0.99
10 23 0.0097 0.55 11.1 2.0 1 23 410 432 410 432 0.98
11 23 0.0037 0.21 12.4 0.7 1 23 438 460 438 460 0.99
12 23 1.5e-05 0.00083 19.9 1.1 1 23 466 488 466 488 0.99
13 23 0.00051 0.029 15.1 1.1 1 23 494 516 494 516 0.99
14 23 9.6e-05 0.0054 17.4 1.4 1 23 522 544 522 544 0.99
15 23 0.15 8.3 7.3 1.7 1 23 550 572 550 572 0.96
16 23 9.8e-06 0.00055 20.5 3.2 1 23 578 600 578 600 0.99
17 23 2.3e-05 0.0013 19.3 0.9 1 23 606 628 606 628 0.99
18 23 1.5e-05 0.00083 19.9 1.1 1 23 634 656 634 656 0.99
19 23 0.00073 0.041 14.6 0.8 1 23 662 684 662 684 0.99
20 23 5.6e-05 0.0031 18.1 1.1 1 23 690 712 690 712 0.99
21 23 0.00011 0.0064 17.1 2.4 1 23 718 740 718 740 0.99
22 23 6.5e-05 0.0036 17.9 1.1 1 23 746 768 746 768 0.99
23 23 0.0068 0.38 11.6 1.0 1 23 774 796 774 796 0.99

Sequence Information

Coding Sequence
ATGGCTGCAACTGACACTGGTGCGGTGGTTTTTCGTTATAATGAGATAAGAGAAGCGTGGATCAAATTATTTATGGAGAAAGAAGTATTTACTTCTTTAATTCAGCATGCATTTGATCAACCTTCCACACTTAACCACAGAATTCACCTAATCAGAGCGGTAATTAATAAATTTACAACTATTCGTTTATACCACGAAGCAAAAGTTACAAATGATTATTTGTCTGTGCGTCAGAAGCTTACGATAGTTTGGCCAATACCGCTGTACCGCTCCTTGGTAATAGATAAAAAATCATTAGTTAAACGCATTCGTATACATACAGGTGAAGGACCATTTAAATGTGAGCTGTGTGATTATAGGGCAAAATCTACCAGTGCATTAGTATGTCATATTCGTACACATACAGCTGAAAAACCATTTAAATGTGATCTGTGTGATTATAAGGCAATAGATAAAAAATCATTAGGTGATAGACCATTTAAATGTGAGTTCTGCGATTATAGGGCAAGACGTAAAGGTGAATTAGTAAATCATATTCGTTTACATACAGGTGAAAAACCATTTAAATGTCACCTATGTGATTATAGGGCAACTTATAAAAATGCAGTAATAAATCATCTTCGTACACATACAGTTAAGAAAAGGAGTCACAATGAAGTAACTAAAGAATTCACAAATATTGAAAAATGTAGCTCTACTAAATTACCACCTAAGAAGTCGGACTTCCAACCACCATTCAAAAAGAAGAAATCACATATGGGCGAAGAAAGTTTAGAAATGCGAATTAGGAAATCGACTGCTAAAGAACGTCTTAAATGTGATTTATGTGAATATAAGACAAGACGAAAAGATACTTTAAAAGCACACATTCTTACACATACAGGTGAAAAACCTTTTAAATGTGAGCTATGTGATTATAAGGCAACACAAAAAAGTCATTTAGTAAGACATAATCGTACACATACAGGTGAAAAATCATTTAAATGTGATTTGTGTGATTATAAGGCATCAGAAAAATGTTATTTGGTAAAACACATTCTTACACATACAGGTGAAAAACCTTTTAAATGTGAGCTATGTGATTATAAGGCAACACAAAAAAGTCATTTAGTAAGACATAATCATACACATACAGGTGAAAAATCATTTAAATGTGATTTGTGTGATTATAAGGCATCAGAGAAATGTTATTTGGTAAAACACATTCTTACACATACAGGTAAACCTTTTAAATGTAAGCTATGTGATTATAGGTCAAATCGTAAAATTGCATTACTAACACACTTTTTAAGACATACAGGTGAAAAACGATTTAAATGTAAGCTATGTGATTATAAAGCAGTATTAAAAGGTGCATTAGTAAGACACTTTCGTACACATACAGGTGAAAGACCATTTAAATGTGACCTATGTGATTATAAGGCAAAAGAGAAAAGTAATTTGGTAAAACACATTCGTACACATACAGGTGAAAAACGATTTAAATGTAAGTTATGTGATTATAAAGCAATAGAAAAAAGTACATTAATAAAACACGTTCGTAGACATACAGGTGAAAGACCATTTAAATGTGAGCAATGCAATTATAAGGCAAAAGATAAAGATACATTAATATATCACATTCGTACACACACTGGTGCAAACACATTTAAATGTAATCTATGTGAATATAAGGCACTACGAAAAACTTCATTGAAATCACACGTTAGTACACATACAGGTGAACAACCATTTAAATGTGAGCTATGTAATTATAAGGCAACACATAAAAGTAATTTAGTAAGACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAAGAGATAAAAGTACATTGGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGATCTATGTGATTATAAGGCAAAAGAGAAAAGTAATTTGGTAAAACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTAAGCTATGTGATTATAAAGCAATAGAAAAAAGTGCATTACTAAAACACGTTCGTAGACATACAGGTGAAAGACCATTCAAATGTGATCTATGCAATTATAAGGCAAAAGATAAAGATACATTATTAAATCACATTCGCACACACACTGGTGTAAAAACATTTAAATGTAATTTATGTGAATATAAGACAACAGATAGAAGTACATTACTAAAACATGTTCGTAGACATACAGGTGAAAGACCATTTAAATGTGACCTATGCGAATATAAGGCAAAAGATAAAAGTACATTATTAAATCACATTCGTACACACACAGGTGAAAAACCATTTAAATGTGATTTATGTGAATATAAGGCAGCACGTAAAAGTTCAATAACAATACACTTTCGTACACATAAAAGTGAAAATATATTAAATTAA
Protein Sequence
MAATDTGAVVFRYNEIREAWIKLFMEKEVFTSLIQHAFDQPSTLNHRIHLIRAVINKFTTIRLYHEAKVTNDYLSVRQKLTIVWPIPLYRSLVIDKKSLVKRIRIHTGEGPFKCELCDYRAKSTSALVCHIRTHTAEKPFKCDLCDYKAIDKKSLGDRPFKCEFCDYRARRKGELVNHIRLHTGEKPFKCHLCDYRATYKNAVINHLRTHTVKKRSHNEVTKEFTNIEKCSSTKLPPKKSDFQPPFKKKKSHMGEESLEMRIRKSTAKERLKCDLCEYKTRRKDTLKAHILTHTGEKPFKCELCDYKATQKSHLVRHNRTHTGEKSFKCDLCDYKASEKCYLVKHILTHTGEKPFKCELCDYKATQKSHLVRHNHTHTGEKSFKCDLCDYKASEKCYLVKHILTHTGKPFKCKLCDYRSNRKIALLTHFLRHTGEKRFKCKLCDYKAVLKGALVRHFRTHTGERPFKCDLCDYKAKEKSNLVKHIRTHTGEKRFKCKLCDYKAIEKSTLIKHVRRHTGERPFKCEQCNYKAKDKDTLIYHIRTHTGANTFKCNLCEYKALRKTSLKSHVSTHTGEQPFKCELCNYKATHKSNLVRHIRTHTGEKPFKCELCDYKARDKSTLVTHIRTHTGEKPFKCDLCDYKAKEKSNLVKHIRTHTGEKPFKCKLCDYKAIEKSALLKHVRRHTGERPFKCDLCNYKAKDKDTLLNHIRTHTGVKTFKCNLCEYKTTDRSTLLKHVRRHTGERPFKCDLCEYKAKDKSTLLNHIRTHTGEKPFKCDLCEYKAARKSSITIHFRTHKSENILN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-