Ttri010431.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:2929670-2941442[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00027 0.015 15.9 0.8 1 23 287 309 287 309 0.98
2 19 8.7e-05 0.0049 17.5 3.1 1 23 315 337 315 337 0.99
3 19 7e-06 0.00039 20.9 0.9 1 23 343 365 343 365 0.99
4 19 6.8e-05 0.0038 17.9 2.1 1 23 371 393 371 393 0.98
5 19 0.00045 0.025 15.3 3.6 1 23 399 421 399 421 0.99
6 19 0.00019 0.011 16.4 0.1 1 23 427 449 427 449 0.98
7 19 3.1e-05 0.0017 18.9 1.5 1 23 455 477 455 477 0.99
8 19 0.0042 0.23 12.2 1.5 1 23 483 505 483 505 0.91
9 19 0.00047 0.026 15.2 2.5 1 23 511 533 511 533 0.99
10 19 0.0001 0.0058 17.3 0.2 1 23 539 561 539 561 0.99
11 19 0.0011 0.061 14.1 0.8 1 23 567 589 567 589 0.99
12 19 1e-05 0.00058 20.4 0.6 1 23 595 617 595 617 0.99
13 19 0.0042 0.23 12.2 1.5 1 23 623 645 623 645 0.91
14 19 0.00047 0.026 15.2 2.5 1 23 651 673 651 673 0.99
15 19 3.3e-05 0.0018 18.8 0.4 1 23 679 701 679 701 0.99
16 19 0.0011 0.061 14.1 0.8 1 23 707 729 707 729 0.99
17 19 1e-05 0.00058 20.4 0.6 1 23 735 757 735 757 0.99
18 19 0.00038 0.021 15.5 0.9 1 23 763 785 763 785 0.99
19 19 0.00045 0.025 15.3 1.5 1 23 791 814 791 814 0.97

Sequence Information

Coding Sequence
ATGAAAGATATATTATGTGCTACATGTTTGGCAACTGATCGCAATTTAACGCCTTTAGAATCTGAAATATTTGTTATATTACATCATTTAATGGTGCAAAAGGGATACAGTGAATTAAGAATAACTGACAAAGTATGTTGGGAATGTTTTGCACAATTGAACAATGTTAGAAAATTCCAGAATAAAGCTTATGATAGTTTACGAAGACTACACGAATATTGTTATACAAAGGAGAATCATCATGAGTACACAAATAATTCCCGAACGACATTGGGTATAGCAAAATCTAAAAATATAAACATACATAAAGATTTAAATACAAATGATAAAGAATATGATGGAGAGAATATTCTAGAGCTGGATGCTACTGAAGTATCTATAAAACTTGAGGAATATGAAGAGAATATGTTTGTTGAGGATGGTCTGGTAGATGTAGAAATCGCATTACCACATGATGATGATGATATGAAAGTCAATACAATCAAAAGTGAAAATGAAATAGCACAAGATGAGCAATCAATGAATGAAGATACTCCGAAGATACAGGTGAAAGATATCGCAAATATAAAATTATTTGGTTCCACTTCGCTGTACGGGAATGTAGAACCAACTTTGCGTCTGAACATATTTAATGATCAATATCCCACAGATAGACGAGAGGAATTAAATAAAATATTCAATGAAGAGGTCGAAAATGAAATTCTACAGAATCATGATTACTTAGCAAGTACGAGTGAAGAAGGAAAAACTAGCACTAAAAAATTACAATCTAAGAGAATAGTTAAACCCATCAAAAAAAGTTCAAAACCAACATTAAAATGTAATAAATTAAATACAGATATAAAGGAAAAATCAACATTCATATGCAATTTATGTGATTATAAAACAACAATTAGATGGAACTTAATGAGACACGTTCGTACACATACAAGTGATAAACCATATAAATGTAATTTATGTGAATATAAGACAACACGAAAATCATATTTAAATGTCCACAGTCGTACACACACAGGACAAAAACCATATGAATGTAATTTATGTGACTATAAGACAACACAAAGTAGTTCCCTAACAGGTCACATTCGTACACACACAGGCGATAAACCACATAAATGTAATTTATGTGAATATAAAGCAACACGTAAAAGTTCATTAATTATTCACATTCGGACACACACAGGAGAAAAACCATATAAATGTAATTCATGTGATTACAAGGCAAAACATCATGGTGCCCTAATAAGGCACATTCGTACACATACAGGAGAGAAACCATATGAATGTAATTTATGTGATTATAAGGCATCACAAAAAGGTAGTTTAATAGATCACATTCGTGCACACACAGGACAACAACCATATAAATGTAATTTTTGTGAATATGAGTCCACACGAAAACGTAATTTAATAAATCATATTCGTATACACACAGAACCCAAAAAATATAAATGTAATTTATGTGAATATAAGACAACACGTAAACGTAACCTAATAGATCACGATCTTACACACACAGGACAAAAACCATTCGAATGTCATTTATGTGAATATAAGGCAATACAAAAAGTTCATTTAATTAATCACATCCGTACACACACAGGAGAACAACCATATGAATGTAATTTATGTGAATATAAGACGATAAGTAATAGTGCCCTAATAAGTCACATTCGTTCACACACAGGAGAAAAACCATTTCAATGTAATTTATGTGATTTTAAGACTACATATAATGGTGTCCTGATAAGTCACATTCGTAGACACACAGGAGAAAAACCATTTCAATGTAATTTATGTGATTATAAGTCAATACAAAAAAGTGCATTAATAAGTCACATTCGTACACACACGGGAGAAAAACCATATAAATGTAATTTATGTGAATATAAGACAACACGTAAACGTAACCTAATAGATCACGATCTTACACACACAGGACAAAAACCATTCGAATGTCATTTATGTGAATATAAGGCAATACAAAAAGTTCATTTAATAAATCACATCCGTACACACACAGGAGAACAACCATATGAATGTAATTTATGTGAATATAAGACGACAAGCAATAGTGCCCTAATAAGTCACATTCGTTCACACACAGGAGAAAAACCATTTCAATGTAATTTATGTGATTTTAAGACTACATATAATGGTGTCCTGATAAGTCACATTCGTAGACACACAGGAGAAAAACCATTTCAATGTAATTTATGTGATTATAAGTCAATACAAAAAAGTGCATTAATAAGTCACATTCGTACACACACGGGAGAAAAACCATATAAATGTAATTTATGTGATTTTAAGACAATATATAACAGTGTCCTGATAAGTCACATACGTACACACACAGGAGAAAAACCATTTCAATGTAATTTATGTGATTATAAGTCAACATTTATAAATAATTTAAAAAGACACATTCGTGGACAACACTCAACTGAAAAAAATCAACAATAA
Protein Sequence
MKDILCATCLATDRNLTPLESEIFVILHHLMVQKGYSELRITDKVCWECFAQLNNVRKFQNKAYDSLRRLHEYCYTKENHHEYTNNSRTTLGIAKSKNINIHKDLNTNDKEYDGENILELDATEVSIKLEEYEENMFVEDGLVDVEIALPHDDDDMKVNTIKSENEIAQDEQSMNEDTPKIQVKDIANIKLFGSTSLYGNVEPTLRLNIFNDQYPTDRREELNKIFNEEVENEILQNHDYLASTSEEGKTSTKKLQSKRIVKPIKKSSKPTLKCNKLNTDIKEKSTFICNLCDYKTTIRWNLMRHVRTHTSDKPYKCNLCEYKTTRKSYLNVHSRTHTGQKPYECNLCDYKTTQSSSLTGHIRTHTGDKPHKCNLCEYKATRKSSLIIHIRTHTGEKPYKCNSCDYKAKHHGALIRHIRTHTGEKPYECNLCDYKASQKGSLIDHIRAHTGQQPYKCNFCEYESTRKRNLINHIRIHTEPKKYKCNLCEYKTTRKRNLIDHDLTHTGQKPFECHLCEYKAIQKVHLINHIRTHTGEQPYECNLCEYKTISNSALISHIRSHTGEKPFQCNLCDFKTTYNGVLISHIRRHTGEKPFQCNLCDYKSIQKSALISHIRTHTGEKPYKCNLCEYKTTRKRNLIDHDLTHTGQKPFECHLCEYKAIQKVHLINHIRTHTGEQPYECNLCEYKTTSNSALISHIRSHTGEKPFQCNLCDFKTTYNGVLISHIRRHTGEKPFQCNLCDYKSIQKSALISHIRTHTGEKPYKCNLCDFKTIYNSVLISHIRTHTGEKPFQCNLCDYKSTFINNLKRHIRGQHSTEKNQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-