Ttri010390.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:2525422-2533677[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2.8e-05 0.0016 19.0 0.2 1 23 314 336 314 336 0.99
2 19 1.5e-05 0.00084 19.9 0.5 1 23 342 364 342 364 0.99
3 19 5.1e-05 0.0028 18.2 0.8 1 23 370 392 370 392 0.99
4 19 1.7e-05 0.00097 19.7 0.9 1 23 398 420 398 420 0.99
5 19 7e-05 0.0039 17.8 0.3 1 23 426 448 426 448 0.99
6 19 4.9e-05 0.0028 18.3 0.8 1 23 454 476 454 476 0.99
7 19 0.00013 0.0071 17.0 0.7 1 23 482 504 482 504 0.98
8 19 1.7e-05 0.00097 19.7 0.9 1 23 510 532 510 532 0.99
9 19 2.3e-05 0.0013 19.3 0.7 1 23 538 560 538 560 0.99
10 19 9.5e-05 0.0054 17.4 0.1 1 23 566 588 566 588 0.99
11 19 0.00058 0.033 14.9 0.3 1 23 594 616 594 616 0.99
12 19 0.0034 0.19 12.5 1.7 1 23 622 644 622 644 0.99
13 19 0.00014 0.0076 16.9 1.0 1 23 650 672 650 672 0.99
14 19 2.8e-05 0.0016 19.1 2.7 1 23 678 700 678 700 0.99
15 19 6.1e-05 0.0034 18.0 1.3 1 23 706 728 706 728 0.99
16 19 1.5e-05 0.00084 19.9 0.9 1 23 734 756 734 756 0.99
17 19 2.3e-05 0.0013 19.3 2.6 1 23 762 784 762 784 0.99
18 19 5.7e-05 0.0032 18.1 2.3 1 23 790 812 790 812 0.99
19 19 2.4e-05 0.0014 19.2 0.7 1 23 818 840 818 840 0.99

Sequence Information

Coding Sequence
ATGCGGTCATTAAGGAGTAACCATAATAATGAGATCACAAATAATCCTCAAACAACATTAGGTATAACAAATTTGAAAAATATAAACATACATAATAATTTGAATAAAAGTGATGAAAAATATGATGAAGAGGATATTTTAAAGTTAGATCAGCTAACTAAAGTAAAACTTGAGGAATATGGAGAGGTTATGTTTATTGAGAATAATATAGGCAGTAGTGTAAAAATTGAACCTATAAATAATGTGGATTTTGGAACCGCATTGCTGGACGATGAGTATAAAGATGATGTGGATGATATTGATGTCAGTACGATTAAAAATTATAATGCAGTAGTACAAGATGAGCAATCAATGATTGAAGTAAAAATAGAAGATACTCTGCAAGTACGGAATAATATAGACAGTTGTGTAAAAATTGAACCTATAAATAATGTGGATTTTGGAACCGCATTGCTGGACGATGAGTATAAAGATAATGTGGATGATATTGATGTCAGTACGATTAAAAATTATAATGGGGTAGTACAAGATGAGCAATCAATAATTGAAGTAAAAATAGAAGATACTCTGCAAATACGGGTAAAAGACTTTGGAAATATACAAGTAGATTCTAATTCGCCATGCGGTGAAGTAGGACCAACATGGCGTCAACAAATGTTACCAGATGTACAATTAGCCACTGGAGTGGGGGAGTTGAATAAAACTTGTCATTATGAAAATATGTGCAAGAAAAGGAACTACAATGAAGTAAATGAAAAAATCATAATGAAAAACTTTGCTTTTACAAATTCAGAAGTTTACACAAACATAGGAACATGTAGCTCTACTAAATTACCACCTAAGGAGTTGGACTTTAAACCACCATTCAAAAAGAAGAAATCACATAGAGGCGAAGATAGAGTGGAAACACGAATTAGGAAATTGACTGATAAACAACCATTTAAATGTGATCTATGTGATTATAAGGCAACAAATAACAGTGCATTAGTAATACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGACCTATGTGATTATAAGGCAATAAATAAGAGTGCATTATTGAGACACATTCGTACACACACAGGTGAAAAACCATTTAAATGTGACCTATGTGATTATAAGGCAACAGAAAAAGATAATTTAGTAAAACACATTCGTAAACATACAGGTGAAAGACCATTTAAATGTGATCTATGTGATTATAAGGCAATAAATAAAAGTACATTATTGAGACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGATCTATGTGATTATAAGGCAATTAATAACAGTGCATTATTGAGGCACGTTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAGAAAAAGATAATTTAGTAAAACACATTCGTAAACATACAGGTGAAAGACCATTTAAATGTGATCTATGTGATTATAAGGCAAAAGATAAAGGTACTTTAGTAAAACACATTCGTAATCATACAGGTGAAAGACCATTTAAATGTGATCTATGTGATTATAAGGCAATAAATAAAAGTACATTATTGAGACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGATCTATGTGATTATAAGGCAATAAATAACAGTACATTATTGAGACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGATCTATGTGATTATAAGGCAATAAATAACAGTGCATTAGTAATACACATTCGTACACATACAGGTGAAAAACAATTTAAATGTGATCTATGTGATTATAAGGCAATAAATAACAGTGTATTGGTAACACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGATCTATGTGATTATAAGGCAATAAATATCTGTACATTATTGAGACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTAAGTTATGTGATTATAAGGCAACAGAGAAAGGTACTTTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTCATTATAAGACAACAAATAACAGTGCATTAGTAACACACATCCGTACACATACAGGTGAAAAACCATATAAATGTGACCTATGTGATTATAAGGCAGCACATCAAAGTACATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTAAGCTATGTGATTATAAGGCAACAAGAAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTCATTATAGGACAACAAATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCGTTTAAATGTGACCTATGTGATTATAAGGCAACACATCAAAGTACATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTAAGCTATGTGATTATAAGGCAACAAGTAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTTAA
Protein Sequence
MRSLRSNHNNEITNNPQTTLGITNLKNINIHNNLNKSDEKYDEEDILKLDQLTKVKLEEYGEVMFIENNIGSSVKIEPINNVDFGTALLDDEYKDDVDDIDVSTIKNYNAVVQDEQSMIEVKIEDTLQVRNNIDSCVKIEPINNVDFGTALLDDEYKDNVDDIDVSTIKNYNGVVQDEQSIIEVKIEDTLQIRVKDFGNIQVDSNSPCGEVGPTWRQQMLPDVQLATGVGELNKTCHYENMCKKRNYNEVNEKIIMKNFAFTNSEVYTNIGTCSSTKLPPKELDFKPPFKKKKSHRGEDRVETRIRKLTDKQPFKCDLCDYKATNNSALVIHIRTHTGERPFKCDLCDYKAINKSALLRHIRTHTGEKPFKCDLCDYKATEKDNLVKHIRKHTGERPFKCDLCDYKAINKSTLLRHIRTHTGEKPFKCDLCDYKAINNSALLRHVRTHTGEKPFKCELCDYKATEKDNLVKHIRKHTGERPFKCDLCDYKAKDKGTLVKHIRNHTGERPFKCDLCDYKAINKSTLLRHIRTHTGEKPFKCDLCDYKAINNSTLLRHIRTHTGEKPFKCDLCDYKAINNSALVIHIRTHTGEKQFKCDLCDYKAINNSVLVTHIRTHTGERPFKCDLCDYKAINICTLLRHIRTHTGEKPFKCKLCDYKATEKGTLVKHIRTHTGEKPFKCELCHYKTTNNSALVTHIRTHTGEKPYKCDLCDYKAAHQSTLVTHIRTHTGEKPFKCKLCDYKATRNSALVTHIRTHTGEKPFKCELCHYRTTNNSALVTHIRTHTGEKPFKCDLCDYKATHQSTLVTHIRTHTGEKPFKCKLCDYKATSNSALVTHIRTHTGEKPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01452553;
90% Identity
iTF_01452553;
80% Identity
-