Ttri010387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:2474948-2494583[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.0001 0.0059 17.3 4.3 1 23 325 347 325 347 0.99
2 27 3.7e-05 0.0021 18.7 0.7 1 23 353 375 353 375 0.99
3 27 3e-05 0.0017 19.0 0.6 1 23 381 403 381 403 0.99
4 27 0.001 0.057 14.2 1.5 1 23 409 431 409 431 0.99
5 27 0.00014 0.0078 16.9 1.2 1 23 437 459 437 459 0.99
6 27 0.00043 0.024 15.3 3.0 1 23 465 487 465 487 0.99
7 27 6.2e-05 0.0035 18.0 0.5 1 23 493 515 493 515 0.99
8 27 0.0044 0.25 12.1 2.9 1 23 521 543 521 543 0.99
9 27 0.00058 0.033 14.9 1.7 1 23 549 571 549 571 0.99
10 27 7.6e-05 0.0043 17.7 1.1 1 23 577 599 577 599 0.99
11 27 7.6e-05 0.0043 17.7 1.1 1 23 605 627 605 627 0.99
12 27 0.00038 0.021 15.5 2.0 1 23 633 655 633 655 0.99
13 27 0.0001 0.0059 17.3 4.3 1 23 728 750 728 750 0.99
14 27 0.00061 0.034 14.8 2.7 1 23 756 778 756 778 0.99
15 27 0.00027 0.015 15.9 1.9 1 23 784 806 784 806 0.99
16 27 0.00055 0.031 15.0 3.2 1 23 812 834 812 834 0.99
17 27 0.0027 0.15 12.8 3.6 1 23 840 862 840 862 0.99
18 27 0.00058 0.033 14.9 1.7 1 23 868 890 868 890 0.99
19 27 7.6e-05 0.0043 17.7 1.1 1 23 896 918 896 918 0.99
20 27 0.0015 0.087 13.6 5.0 1 23 995 1017 995 1017 0.99
21 27 0.00018 0.01 16.5 1.2 1 23 1023 1045 1023 1045 0.99
22 27 0.00018 0.01 16.5 1.2 1 23 1051 1073 1051 1073 0.99
23 27 0.00018 0.01 16.5 1.2 1 23 1079 1101 1079 1101 0.99
24 27 0.00018 0.01 16.5 1.2 1 23 1107 1129 1107 1129 0.99
25 27 0.00018 0.01 16.5 1.2 1 23 1135 1157 1135 1157 0.99
26 27 0.00037 0.021 15.5 2.2 1 23 1163 1185 1163 1185 0.99
27 27 0.0085 0.48 11.2 0.3 1 23 1191 1213 1191 1213 0.99

Sequence Information

Coding Sequence
ATGAAGGGAGTTAAGGGATATAATGAATTACTTATAACTGACAAAGTATGTTTGGAATGTTTCTCACAATTGGACAATGTTAAGAAATTCCAGAATAAAGCATTTGATAGTTTACGAAAACTACAAGAATATTGTAATCAAAATGAGAACCAGAATGAGGTCGCGAATAATCCGCGAACAACATTAAGTAAAACAAATTTTAAATATATAAACATACGTAATTTGAATAATGCAAGTGATGAAGAGGATATTTTAAAGTTAGATCAGCAAACTGAAGTAAAACTTGAGGAATATGAAGAGGTTATGTTTATTGAGAATAATTCCGGCGTTTGTATAAACAGTGAACCTGAAAATAATGAGGATTCAGGAACCGCATTGCTGTACGATGAGGTTAAAGATGATGTGGATGTCAAAGTAGCACAAGATGAGAAATCATTGAATGGAGTACAATTTGAAGATACTCTGCAGATATGGGTAAACAATTTCGCAAATGTCCAAGAAGAGGAATCTGCTTTTCCAAACGAAGAATTGAATAAACCTTGTCATTCTGAAGAAATACGCAAGAAAACAACCTACAATAAAGCAACTGAAGAATTCATTTTGACGGAAGATCAAAACTTCGCTTGTACAAGTTCGGAAAAACATACAAACTTAGAAAAATTTGGACTTTATAAATTACCACATAAGAAAACAGACTTTAAACCACCATCCAAAAATAAAAATACACATACAGACGTAAAATCATTGCATATTCGTAAACGCACAGGCAAGAAAAGAAGCTACAATGAAGTAACTGAAGAATTCATATTGACGGAAGATCGAAACTTCGCTTGTACGGAAGAACATACAAACTTAGAAAAATGTAGCCTTAATAAGTTACCACATAAGAAAACCGACTTTAAACCACCATCCAAAAATAAAAATACACATACAGGCGTCGAAAATTTTGAAAAACGTTATGCCACAAAAACATTTAAATGTGATATATGTCAATATAAGACAACAAATAAACATTCAATGATACGTCACATTCGTACTCATACAGGTGAAAAACCATATAAATGTAAACTATGTAATTATAAGGCAGCAAATAACAGTGCATTAATAAAACACATTCGTAGACATACAGGTGAAAAACCATATAAATGTAAACTATGTAATTATAAGGCAGCAAATAACAGTGCATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGTTATTTGTGTGAATATAAAGGAAGAACAAAAGGATCATTAACATTGCATATTCGTAGACACACAGGTGAAAAGCCATATAAATGCAATTTTTGTGAATATAAGGCTGCGACACAAAATAACTTAACAATGCACATTCGTACTCATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAAGGAAGAACAAAAGGATCATTAACATTGCATATTCGTAGACACACAGGTGAAAAGCCATATAAATGCAATATTTGTGAATATAAGGCTGCGACACAAAATGAATTAAAAATGCACATTCGTACTCATACAGGTGAAAAGCCATATAAATGTCATTTGTGTGAATATAAGGCACAAACAAAAAAATTATTGAAAGTGCACCTTCGTGTACATACAGGTGAAAAGCCATATAAATGTGAGTTATGTGATTATAAAGCAAGATTTAGAGATTCGTTTGTAAAACACATTCGTACACATACAGGTGAAACACCATATAAATGTGATTTATGTGACTATAAGGCAAAACAAAAAAGTGGATTAGATAGACACATTCGTAAACATACAGGTGAAACACCATATAAATGTGATTTATGTGACTATAAGGCAAAACAAAAAAGTGGATTAGATAGGCACATTCGTAAACATACAGGTGAAACACCATATAAATGTGATTTATGTGACTATAAGGCAAAACAAAAAAGTAGATTAGATAGACACATTCGTAAACATACAGGCAAGAAAAGAAACTACAATAAAGTAACTGAAGAATTCATATTGACGGAAGATCGAAACTTCGCTTGTACAAGTTCAGAAGAACATACAAACTTAGAAAAATGTCGCTTAAATAAATTACCGCTTAAGAAAACAGACTTTAAACCACCATCCAAAAATAAAAATACACATACAAGCGTAGAAAATTTTAAAAAACGTATTGCCAAAAAAACATTTAAATGTGATATATGTCAATATAAGACAACAAATAAACATTCAATGATACGTCACATTCGTACTCATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAAGGAAGAACGAATGTATTATTAACAAATCATATTCGTAGACACACAGGTGAAAAGCCATATAAATGCAATTTTTGTGAATATAAGGCTGCGACACAACATGAATTAAATATACACATTCGTACTCATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAAGGAAGAACGAAAGTATTATTAACAAATCATATTCGTAGACACACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAAGGAAGAACGAAATTATTATTAACAAATCATATTCGTAGACACACAGGTGAAAAGCCATATAAATGTGAGTTATGTGATTATAAAGCAAGATTTAGAGATTCGTTTGTAAAACACATTCGTACACATACAGGTGAAACACCATATAAATGTGATTTATGTGACTATAAGGCAAAGCAAAAAAGTGGATTAGATAGGCACATTCGTAAACATACAGGCAAGAAAAGAAACTACAATAAAGTAACTGAAGAATTCATATTGACGGAAGATCGAAACTTCGCTTGTACAAGTTCAGAAGAACATACAAACTTAGAAAAATGTCGCTTAAATAAATTACCGCTTAAGAAAACAGACTTTAAACCATCATCCAAAAATAAAAATACACATACAAGCGTAGAAAATTTTAAAAAACATTTAAAAATTTTAAAAGCCAAAAAAACATTTAAATGTGTTACATGTCAATATAAGACAACAAATAAACATTCAATGATACGTCACATTCGTACTCATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAGGCTGCGACACAAAATGAATTAAATATACACATTCGTACACATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAGGCTGCGACACAAAATGAATTAAATATACACATTCGTACTCATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAGGCTGCGACACAAAATGAATTAAATATACACATTCGTACACATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAGGCTGCGACACAAAATGAATTAAATATACACATTCGTACTCATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATAAGGCTGCGACACAAAATGAATTAAATATACACATTCGTACACATACAGGTGAAAAACCATATAAATGTCATTTGTGTGAATATGAAGGAAGAAGAAAAGCATCATTAACATTACATATTCGTAGACACACAGGTGAAAAGCCATATAAATGCAATTTGTGTGAATATAAGGCTGCGACACAAAATGAAATAAGTATACACATTCGTACTCATACAGGTGAAAAACCATATAAATGTCATTTGTGTTAA
Protein Sequence
MKGVKGYNELLITDKVCLECFSQLDNVKKFQNKAFDSLRKLQEYCNQNENQNEVANNPRTTLSKTNFKYINIRNLNNASDEEDILKLDQQTEVKLEEYEEVMFIENNSGVCINSEPENNEDSGTALLYDEVKDDVDVKVAQDEKSLNGVQFEDTLQIWVNNFANVQEEESAFPNEELNKPCHSEEIRKKTTYNKATEEFILTEDQNFACTSSEKHTNLEKFGLYKLPHKKTDFKPPSKNKNTHTDVKSLHIRKRTGKKRSYNEVTEEFILTEDRNFACTEEHTNLEKCSLNKLPHKKTDFKPPSKNKNTHTGVENFEKRYATKTFKCDICQYKTTNKHSMIRHIRTHTGEKPYKCKLCNYKAANNSALIKHIRRHTGEKPYKCKLCNYKAANNSALVKHIRTHTGEKPYKCYLCEYKGRTKGSLTLHIRRHTGEKPYKCNFCEYKAATQNNLTMHIRTHTGEKPYKCHLCEYKGRTKGSLTLHIRRHTGEKPYKCNICEYKAATQNELKMHIRTHTGEKPYKCHLCEYKAQTKKLLKVHLRVHTGEKPYKCELCDYKARFRDSFVKHIRTHTGETPYKCDLCDYKAKQKSGLDRHIRKHTGETPYKCDLCDYKAKQKSGLDRHIRKHTGETPYKCDLCDYKAKQKSRLDRHIRKHTGKKRNYNKVTEEFILTEDRNFACTSSEEHTNLEKCRLNKLPLKKTDFKPPSKNKNTHTSVENFKKRIAKKTFKCDICQYKTTNKHSMIRHIRTHTGEKPYKCHLCEYKGRTNVLLTNHIRRHTGEKPYKCNFCEYKAATQHELNIHIRTHTGEKPYKCHLCEYKGRTKVLLTNHIRRHTGEKPYKCHLCEYKGRTKLLLTNHIRRHTGEKPYKCELCDYKARFRDSFVKHIRTHTGETPYKCDLCDYKAKQKSGLDRHIRKHTGKKRNYNKVTEEFILTEDRNFACTSSEEHTNLEKCRLNKLPLKKTDFKPSSKNKNTHTSVENFKKHLKILKAKKTFKCVTCQYKTTNKHSMIRHIRTHTGEKPYKCHLCEYKAATQNELNIHIRTHTGEKPYKCHLCEYKAATQNELNIHIRTHTGEKPYKCHLCEYKAATQNELNIHIRTHTGEKPYKCHLCEYKAATQNELNIHIRTHTGEKPYKCHLCEYKAATQNELNIHIRTHTGEKPYKCHLCEYEGRRKASLTLHIRRHTGEKPYKCNLCEYKAATQNEISIHIRTHTGEKPYKCHLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-