Ttri010393.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:2560847-2580368[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.43 24 5.9 3.8 2 23 373 394 372 394 0.97
2 26 0.00017 0.0097 16.6 4.2 1 23 400 422 400 422 0.99
3 26 0.0002 0.011 16.4 2.2 1 23 428 450 428 450 0.98
4 26 0.00022 0.012 16.2 0.5 2 23 457 478 456 478 0.96
5 26 3.4e-06 0.00019 21.9 4.9 1 23 484 506 484 506 0.99
6 26 0.0025 0.14 12.9 0.3 1 23 512 534 512 534 0.99
7 26 0.072 4 8.3 4.3 1 23 540 562 540 562 0.99
8 26 3.2e-05 0.0018 18.9 0.8 1 23 568 590 568 590 0.99
9 26 0.00028 0.016 15.9 1.2 1 23 596 618 596 618 0.99
10 26 0.0002 0.011 16.3 1.2 1 23 624 646 624 646 0.99
11 26 0.00013 0.0071 17.0 0.3 1 23 977 999 977 999 0.99
12 26 8.8e-05 0.005 17.5 0.8 1 23 1005 1027 1005 1027 0.99
13 26 0.00016 0.0088 16.7 0.5 1 23 1033 1055 1033 1055 0.98
14 26 0.00024 0.014 16.1 1.0 1 23 1061 1083 1061 1083 0.99
15 26 0.0003 0.017 15.8 0.4 1 23 1089 1111 1089 1111 0.99
16 26 0.0003 0.017 15.8 0.4 1 23 1117 1139 1117 1139 0.99
17 26 0.049 2.7 8.9 0.0 5 23 1146 1164 1144 1164 0.95
18 26 0.012 0.67 10.8 0.2 1 23 1170 1192 1170 1192 0.96
19 26 1e-05 0.00059 20.4 1.0 1 23 1198 1220 1198 1220 0.99
20 26 0.00024 0.014 16.1 1.0 1 23 1226 1248 1226 1248 0.99
21 26 5e-05 0.0028 18.3 2.7 1 23 1254 1276 1254 1276 0.99
22 26 0.0001 0.0058 17.3 0.4 1 23 1282 1304 1282 1304 0.99
23 26 4.4e-05 0.0025 18.4 0.7 1 23 1310 1332 1310 1332 0.99
24 26 5e-05 0.0028 18.3 2.7 1 23 1338 1360 1338 1360 0.99
25 26 0.0002 0.011 16.4 2.3 1 23 1366 1388 1366 1388 0.99
26 26 4.4e-05 0.0025 18.4 0.7 1 23 1394 1416 1394 1416 0.99

Sequence Information

Coding Sequence
ATGAAAGATGCGCTGAACCTTTTAGAGTTCCTCTGTACCTTGGACAGACTGGATATCCTAGCGATGTCCCTTCTCAGTGACTTGAATCGCAGGTACCACATTCAGCGGGCTACAGTTACAGTTATTTGCAGGCTCAGTTCTGCACTGGAAGTCCTCTTCCGTTTCTTCATGCATTCTTCAACGGCTCCCCTTCAGCGGAGCCACCCGATCTCCTCCAGGAAGGCTAGGAGACACTTCTCGCTCCTGCAGACCTCTGGAAGCGTCCTTGCGTTGTCAAGGAACTTCTGTCTTGCTTCGGCCACTCCTGCACTGAGCGGGTTATTAAAATCACTTCCATTGGGATACAATGTAAAAATAACTGACAAAGTATGTTGGGAATGTTTAGCACAATTAAACAATGTTAGAAAATTCCAGAATAAAGCATTTGATAGTTTACAAAGACTACAAGAGTATTGTAATAAAATAGAGATACATGATGAATATCCAAATTATTCTCGATCAACATTGAGTATTGTGAGTAATAAAAATATAAACATACAAAAGTATTTAAATGATGATGATTATACTAAGAAAGATGTTTTAGAGGTAGACCAGGAGGCTACTGAGAAAGCTGTGAAACTTGAGAAAGATTTAAGCATTTATGTAAAAATTGAATCACCAGATGATGAGTGTAGAGATGATGTGGATGATAATGATGTCAGTGAGATTAAAAATGATAATGAAGTAGTACAAGATGAGCAATTAACGAATAAAGTAAAAATAGAAGATCCTCTGCAGATATGGGTAAAGAATTTCGCAAATATTCAACAAATGACCTCTACTTCGCTATGCGGAAATATAGGACCAACATGGCAACTGCCCACATACAGAGAAGAGGAACTGAATAAATATTATCATTCCCAAGAAATATATCAAAACAGGATCCTCAATGAAAAAGAAAATGAAAACATCACTTGTACAAGTTCAGAAGTTCATACAAACATAGAAAAAAATAGCTCTAATGAATTACCACACAATAAATTATGCTTCAAACCACTATTTAAAAACAAAAAAACACATGAAAGCGAAGAAAGTTTGAAAACACGCATGAAAAAATTGCATGCTAAAGAACTACTTAAATGTCATTTATGTCAATTTAATACCATAAACAAAAATATATTTAATAGACACATTCGTACACACACAGGGGAAAAACCATATAAATGTGAGTTATGTGATTATAAGACAACACACAAAGTTAATTTAATGAGACACAATCGTACTCACACAGGCGAGAGACCATTTAAATGCGAGTTATGTGATTATAAGGCAACACGTAAAAGCTCACTAATAAAACACAGTCGCAAACATCCAGGTGAAACCTCATTGAATTGCAACTTGTGTGACTATAAGGCAACACAAAATGGAGACTTAAGAACACACATTCGTACACATACTGTTGAAAAACCATTTAAATGTGAACTATGTGATTATAAGACAACACACAAAAGTAATTTAACGAAACACATTCGTACACACACAGGCGAAAGACCATTTCAATGTGAGTTATGTGATTATAAAGCAATAGATACAAGTACATTGTTAATTCACACTCGTACACATACGGGTGAAAAACCATATCAATGTCATTTGTGTGGATATAATACAATACAAAAATTTGGATTAATATGTCACATTCGTAAACACACAGGTGAAAAACCATTTAAATGTGAGTTATGTGATTATAAGACAGCACGAAATGGTGACTTATTAACACACATGCGTAAACATACAGGTATGAAACCATTTAAATGTGAGTTATGTGATTATAAGGCAATAAATAAAAGTACATTGTTAAATCACACTCGTACACACACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCATCACGAAATAGTGAAATAAGAAGACACATGACCACACATACAGGTGAAAAACGATATAAATTCTACATGGACCATCATATTTTGGGAAGAATGGAGATATGGCGTGGTAGGAGAACTCTCACTGTAATGCTGCAGCCACACTATGCTCTTCGCACTGCTACTCGCGATGTTCATCGCGTTGCTCCAATGGACGACAACATTGGATATGATGAATTAAGAATAACTGACAAAGTATGTTGGGAATGTTTTGCACAATTGAACAATGTTAGAAAATTCCAGAATAAGGCATTTGATAGTTTACGAAGACTACAAGAATATTGTTATACAAAGGAGAACCATAATGAGATCACAAATAATCCTCAAACAACATTAGGTATAACAAATTTGAAAAATATAAACATACATAATAATTTGAATAAAAGTGATGACAAATATGATGAAGAGGATATTTTAAAGTTAGATCAGCTAACTAAAGTAAAACTTGAGGAATATGGAGAGGTTATGTTTATTGAGAATAATATAGGCAATTGTGTAAAAATAGAACCTATAAATAATTTTGATTTTGGAACCGCATTGCTGGACGATGAGTATAAAGATGATGTGGATGATATTGATGTCAGTGCGATTAAAAATGATAATGAAGTAGTACAAGATGAGCCATCAATGAATGAAGTAAAAATAGAAGATACTTTGCAAATATGGGTAAAAGACTGCGGTGAAGTAGGACCAACATGGCGCCAACAAATGTTACCAGATGTACAATTAGCCACTAGAGTGGGGGAGTTGAATAAAACTTATCATTATGAAAATATGTGCAAGAAAAGGAGCTACAATGAAGTAAATGAAAAAATCATAATGAAAAACTTTGCTTTTACAAATTCAGAAGTTTACACAAACATAGGAACATGTAGCTCTACTAAATTACCACCTAAGGAGTTGGACTTTAAACCACCATTCAAAAAGAAGAAATCACATAGAGGCGAAGAAAGAGTGGAAACACGAATTAAGAAATTGACTGATAAACAACCATTTAAATGTGATCTATGTGATTATAAGGCAATAAATAACAGTGCATTATTGAGACACGTTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAGAAAAAGATAATTTAGTAAAACACATTCGTAAACATACAGGTGAAAGACCATTTAAATGTGATCTATGTGATTATAAGGCAATAAATAAGAGTACATTATTGAGACACATTCGTGCACATACAGGTGAAAAACCATTTAAATGTAAGCTATGTGATTATAAGGCAACAGAGAAAGGTACTTTAGTAAAACACATTCGTACACATACAGGTGAAAGTACATTTAAATGTGATCTATGTGATTATAAGGCAATAGATAAAGGTACTTTAGTAAAACACATTCGTAAACATACAGGTGAAAGACCATTCAAATGTGATCTATGTGATTATAAGGCAATAGATAAAGGTACTTTAGTAAAACACATTCGTAAACATACAGGTAAAAAACCGTTTAAATGTGATTATAAGGCAATAAATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACAATTCAAATGTATTTTATGTGATTATAAGGCAATAAATAACAGTGCATTGGTAACACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGATCTATGTGATTATAAGGCAACAAATAACAGTTCATTATTGAGACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTAAGCTATGTGATTATAAGGCAACAGAGAAAGGTACTTTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTCATTATAAGACAACAAATAACAGTGCATTAGTAACACACATCCGTACACATACAGGTGAAAAACCATATAAATGTGACCTATGTGATTTTAAGGCAACAAGTAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTAAGCTATGTGATTATAAGGCAACAAGTAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTCATTATAAGACAACAAATAACAGTGCATTAGTGACACACATCCGTACACATACAGGTGAAAAACCATATAAATGTGACCTATGTGATTTTAAGGCAACACATCAAAGTACATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTAAGCTATGTGATTATAAGGCAACAAGTAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTTAA
Protein Sequence
MKDALNLLEFLCTLDRLDILAMSLLSDLNRRYHIQRATVTVICRLSSALEVLFRFFMHSSTAPLQRSHPISSRKARRHFSLLQTSGSVLALSRNFCLASATPALSGLLKSLPLGYNVKITDKVCWECLAQLNNVRKFQNKAFDSLQRLQEYCNKIEIHDEYPNYSRSTLSIVSNKNINIQKYLNDDDYTKKDVLEVDQEATEKAVKLEKDLSIYVKIESPDDECRDDVDDNDVSEIKNDNEVVQDEQLTNKVKIEDPLQIWVKNFANIQQMTSTSLCGNIGPTWQLPTYREEELNKYYHSQEIYQNRILNEKENENITCTSSEVHTNIEKNSSNELPHNKLCFKPLFKNKKTHESEESLKTRMKKLHAKELLKCHLCQFNTINKNIFNRHIRTHTGEKPYKCELCDYKTTHKVNLMRHNRTHTGERPFKCELCDYKATRKSSLIKHSRKHPGETSLNCNLCDYKATQNGDLRTHIRTHTVEKPFKCELCDYKTTHKSNLTKHIRTHTGERPFQCELCDYKAIDTSTLLIHTRTHTGEKPYQCHLCGYNTIQKFGLICHIRKHTGEKPFKCELCDYKTARNGDLLTHMRKHTGMKPFKCELCDYKAINKSTLLNHTRTHTGEKPFKCELCDYKASRNSEIRRHMTTHTGEKRYKFYMDHHILGRMEIWRGRRTLTVMLQPHYALRTATRDVHRVAPMDDNIGYDELRITDKVCWECFAQLNNVRKFQNKAFDSLRRLQEYCYTKENHNEITNNPQTTLGITNLKNINIHNNLNKSDDKYDEEDILKLDQLTKVKLEEYGEVMFIENNIGNCVKIEPINNFDFGTALLDDEYKDDVDDIDVSAIKNDNEVVQDEPSMNEVKIEDTLQIWVKDCGEVGPTWRQQMLPDVQLATRVGELNKTYHYENMCKKRSYNEVNEKIIMKNFAFTNSEVYTNIGTCSSTKLPPKELDFKPPFKKKKSHRGEERVETRIKKLTDKQPFKCDLCDYKAINNSALLRHVRTHTGEKPFKCELCDYKATEKDNLVKHIRKHTGERPFKCDLCDYKAINKSTLLRHIRAHTGEKPFKCKLCDYKATEKGTLVKHIRTHTGESTFKCDLCDYKAIDKGTLVKHIRKHTGERPFKCDLCDYKAIDKGTLVKHIRKHTGKKPFKCDYKAINNSALVTHIRTHTGEKQFKCILCDYKAINNSALVTHIRTHTGERPFKCDLCDYKATNNSSLLRHIRTHTGEKPFKCKLCDYKATEKGTLVKHIRTHTGEKPFKCELCHYKTTNNSALVTHIRTHTGEKPYKCDLCDFKATSNSALVTHIRTHTGEKPFKCKLCDYKATSNSALVTHIRTHTGEKPFKCELCHYKTTNNSALVTHIRTHTGEKPYKCDLCDFKATHQSTLVTHIRTHTGEKPFKCKLCDYKATSNSALVTHIRTHTGEKPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-