Ttri010389.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:2503474-2515544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.6 87 4.1 4.5 2 23 338 359 337 359 0.96
2 24 0.0075 0.42 11.4 0.2 2 23 366 387 365 387 0.97
3 24 4.5e-05 0.0025 18.4 0.7 1 23 393 415 393 415 0.99
4 24 1.6e-05 0.0009 19.8 0.4 1 23 421 443 421 443 0.99
5 24 2.7e-05 0.0015 19.1 4.3 1 23 449 471 449 471 0.99
6 24 0.00018 0.01 16.5 0.1 1 23 477 499 477 499 0.99
7 24 0.00042 0.024 15.3 0.3 1 23 505 527 505 527 0.99
8 24 0.00017 0.0095 16.6 1.2 1 23 533 555 533 555 0.99
9 24 2.4e-05 0.0014 19.3 0.3 1 23 561 583 561 583 0.99
10 24 3.2e-05 0.0018 18.9 0.3 1 23 589 611 589 611 0.99
11 24 3.2e-05 0.0018 18.9 0.3 1 23 617 639 617 639 0.99
12 24 3.2e-05 0.0018 18.9 0.3 1 23 645 667 645 667 0.99
13 24 3.2e-05 0.0018 18.9 0.3 1 23 673 695 673 695 0.99
14 24 6e-05 0.0034 18.0 0.5 1 23 701 723 701 723 0.99
15 24 2.7e-05 0.0015 19.1 0.4 1 23 729 751 729 751 0.99
16 24 2e-05 0.0011 19.5 3.2 1 23 757 779 757 779 0.99
17 24 0.00044 0.025 15.3 0.2 1 23 785 807 785 807 0.99
18 24 2e-05 0.0011 19.5 0.4 1 23 813 835 813 835 0.99
19 24 1.5e-05 0.00084 19.9 0.7 1 23 841 863 841 863 0.99
20 24 0.002 0.11 13.3 0.4 1 23 869 891 869 891 0.99
21 24 1.2e-05 0.00066 20.3 1.2 1 23 897 919 897 919 0.99
22 24 0.00021 0.012 16.3 0.2 1 23 925 947 925 947 0.99
23 24 2.7e-05 0.0015 19.1 0.4 1 23 953 975 953 975 0.99
24 24 7.1e-06 0.0004 20.9 1.0 1 23 981 1004 981 1004 0.98

Sequence Information

Coding Sequence
ATGTATGGAAGTGAATGTTGGGTGTGGCAAAAGAAGCATGAGAGTAGAGTAAACACTGTAGAAATGCGGTCATTAAGGAGTAACCATAATGAGATCACAAATAATCCTCAAACAACATTAGGTATAACAAATTTGAAAAATATAAACATACATAATAATTTGAATAAAAGTGATGACAAATATGATGAAGAGGATATTTTAAAGTTAGATCAGCTAACTAAAGTAAAACTTGAGGAATATGGAGAGGTTATGTTTATTGAGAATAATATAGGCAGTAGTGTAAAAATTGAACCTATGAATAATGTGGATTTTGGAACCGCATTGCTGGACGATGAGTATAAAGATGATGTGGATGATATTGATGTCAGTACGATTAAAAATTATAATGCAGTAGTACAAGATGAGCAATCAATGATTGAAGTAAAAATAGAAGATACTCTGCAAGTACGGAATAATATAGACAGTTGTGTAAAAATTGAACCTATAAATAATGTGGATTTTGGAACCGCATTGCTGGACGATGAGTATAAAGATAATGTGGATGATATTGATGTCAGTACGATTAAAAATTATAATGGGGTAGTACAAGATGAGCAATCAATAATTGAAGTAAAAATAGAAGATACTCTGCAAATACGGGTAAAAGACTTTGGAAATATACAAGTAGATTCTGATTCGCCATGCGGTGAAGTTGGACCAACATGGCGTCAACAAATGTTACCAGATGAACAATTACCCACTAGAGTGGGGGAGTTGAATAAAACTGGTCATTATGAAAATATGTGGAAGAAAAGGAGCTACAATGAAGTAACTGAAAAATTCATATTAACAGAAGATAAAAACTTCGCTTTAACAAATTCAGAAGTATACACAAACATAGGAACATGGAGCTCTCATAAATTACCACCTAAGGAGTTGGACTTGAAGCCACCATTTAAAAAGAAGAAAACACATAAAGGCGATAAAAGTTTAGAAACACAAATTAGAAAATTGACTGCTAAAGAACCACTTATATGTCATTTATGTAACTATAAGACAAAACTTAAATGTACAATGATAAAACATATTGGTACGCACACAGGTACTAAACAATTAAAATGTAATTTATGTGAATTTAAGGCAACAGATGAAGGTACATTAGTAACACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAAATAAAAGTGGATTAGTAAAACACGTTCGTACACATACAGGTGAAAAACCATTTAAATGTGACCTATGTGATTATAAGGCAACAAATAACAGTGCCTTAATAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGTAAGCTATGTGATTATAAGGTATCACACAAAAGTACATTAGTTAAACACATTCGTAAACATACAGGTGAAAAACCATATAAATGTGACCTATGTGATTATAAGGCAACAGTTAACAGTGCATTAGTAATACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGACCTATGTGTTTATAAGGCAACAAATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAACACGCAAAATTACATTAGTTAAACACATTCGTAAACATACAGGTGAAAAACCATATAAATGTGACCTATGTGATTATAAGGCAACAGATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAGATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAGATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAGATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAGACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAGATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAATACCATATAAATGTGGGCTATGTGATTATAAGGCAACAAATAAAAGTGGATTAGTAAAACACGTTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAAATAACAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGCTATGTGATTATAAGGTATCACACAAAAGTACATTAGTTAAACACATTCGTAAACATACAGGTGAAAAACCATATAAATGTGACCTATGTGATTATAAGGCAACAGTTAACAGTGCATTAGTAACACACGTTCGTACACATACAGGTGAAAAACCATATAAATGTGAGCTATGTGATTATAAGGCAACAAATAACAGTGCATTAGTAACACACATTCGTACACACACTGGTGAAAAACCATATAAATGTGACCTATGTGATTATAAGGCAACAAATAACAGTTCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGCTATGTGATTATAAGGCAACAGAGACAGGGAAATTAGTAAATCACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCAATGTGATTATAAGGCAACAAATAACAGTACATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCCTCAGATACCAGTGGATTAGTAAAACACATTCGTATACATACAGGTGAAAAACCATTTAAATGTGAGCTATGTGATTATAAGGCAACAAATAATAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGACCTATGTGATTATAAGGTAACACGTAAAAGTACATTAGTTAAACACATTCGTATTACACATATTAGTGAATAA
Protein Sequence
MYGSECWVWQKKHESRVNTVEMRSLRSNHNEITNNPQTTLGITNLKNINIHNNLNKSDDKYDEEDILKLDQLTKVKLEEYGEVMFIENNIGSSVKIEPMNNVDFGTALLDDEYKDDVDDIDVSTIKNYNAVVQDEQSMIEVKIEDTLQVRNNIDSCVKIEPINNVDFGTALLDDEYKDNVDDIDVSTIKNYNGVVQDEQSIIEVKIEDTLQIRVKDFGNIQVDSDSPCGEVGPTWRQQMLPDEQLPTRVGELNKTGHYENMWKKRSYNEVTEKFILTEDKNFALTNSEVYTNIGTWSSHKLPPKELDLKPPFKKKKTHKGDKSLETQIRKLTAKEPLICHLCNYKTKLKCTMIKHIGTHTGTKQLKCNLCEFKATDEGTLVTHIRTHTGERPFKCELCDYKATNKSGLVKHVRTHTGEKPFKCDLCDYKATNNSALITHIRTHTGEKPYKCKLCDYKVSHKSTLVKHIRKHTGEKPYKCDLCDYKATVNSALVIHIRTHTGEKPFKCDLCVYKATNNSALVTHIRTHTGEKPFKCELCDYKATRKITLVKHIRKHTGEKPYKCDLCDYKATDNSALVTHIRTHTGERPFKCELCDYKATDNSALVTHIRTHTGERPFKCELCDYKATDNSALVTHIRTHTGERPFKCELCDYKATDNSALVTHIRTHTGERPFKCELCDYKATDNSALVTHIRTHTGEIPYKCGLCDYKATNKSGLVKHVRTHTGEKPFKCELCDYKATNNSALVTHIRTHTGEKPYKCELCDYKVSHKSTLVKHIRKHTGEKPYKCDLCDYKATVNSALVTHVRTHTGEKPYKCELCDYKATNNSALVTHIRTHTGEKPYKCDLCDYKATNNSSLVTHIRTHTGEKPYKCELCDYKATETGKLVNHIRTHTGEKPFKCEQCDYKATNNSTLVKHIRTHTGEKPFKCELCDYKASDTSGLVKHIRIHTGEKPFKCELCDYKATNNSALVTHIRTHTGEKPYKCDLCDYKVTRKSTLVKHIRITHISE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-