Ttri001209.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992311.1:8231604-8232200[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-11 2.2e-08 33.9 0.1 3 35 17 49 15 57 0.91 2 2 0.9 1e+03 -0.2 0.0 9 22 51 64 49 66 0.85
Sequence Information
- Coding Sequence
- ATGGTACGAACTTACAAAAAGAAAAGTTCCAGAGGCAGTTGGTCTGTAGAAAGCATGAAACTGGCAATTGATGCAGTTTTAAGCAAATCGGCAGGTTACAGAAAAGCAGCTCAATTGCACGGTGTTCCACAGTCCACATTGGAGCGTCAAGTCGCAAAAATAAGGAAGGGCGAGGTATCTCTTAATTCAGCTCCAGGTAACTTTAAACCCGTATTTTCCAAACAAGAAGAAGAGGAGCTTGTTATGTATGTAAAAGATATGGAGAAACGATTACTTGGATTGACAACTGTCGTCCTACGAAAACTAGCTTATCAACTCGCAGAAAAAAATGCTAAGACTCACAATTTTAACCATGTTAAAAAGATTGCTGGCACAGATTGGTTAAAAGGCTTCATGAAACGTCACCCGGATTTATCAATTCGAAAACCAAAAAAAAAAACTCTTAAAAACAGAAGACTCAAAAAGCTCACTCTGTCTTCGGAGTCTTCGGAGCGTTGGGTGGCCTGCCAGCTATGTAGACAGTGGGCCCATACAGCCTGTGCAGGAGTTGATGACGATTTAGAAGAAATCTACATTTGCTTATTCTGTGACAAATAA
- Protein Sequence
- MVRTYKKKSSRGSWSVESMKLAIDAVLSKSAGYRKAAQLHGVPQSTLERQVAKIRKGEVSLNSAPGNFKPVFSKQEEEELVMYVKDMEKRLLGLTTVVLRKLAYQLAEKNAKTHNFNHVKKIAGTDWLKGFMKRHPDLSIRKPKKKTLKNRRLKKLTLSSESSERWVACQLCRQWAHTACAGVDDDLEEIYICLFCDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -