Ttri020268.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992315.1:3243388-3244596[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-13 4.9e-10 39.2 0.1 4 42 12 50 10 52 0.94 2 2 8.4 9.5e+03 -3.3 0.0 20 28 105 113 105 115 0.88
Sequence Information
- Coding Sequence
- ATGCGAGAGGGAAGATTATCTTGGAGTACGCGTGCCATGATTGAAGCTGTTAAAGCGGTGAGAGCTAAAACAATGGGAGTAAGCAGAGCTTCAAAATATTACAACGTACCCAAAACTTCACTGCATAACTTTGTTAAAACCAATTTGCCAGCAGAAGTAGTTGTTAAAAAGAAAATACCTAAGACAATTAAAATAAATAGAAGACCTGACACTATATTACCGAGTATTCTGGAGAAACATCTTGTTAAATACTTAGTTATTATAAAGAAGACATATCGTGATTTGACGCGTACCGACGTGGAACGAATTGCATGTCAATTAGCAACAAGACATGGTATTGATCATCCATTTATAGACGAAGCAGCAGGACAAATATGGCTCGATGACTTTCTGAATAGATACAACGATAACCTTTCTAATTATGTATCATTTGCAAAATCGGAATCTACAGATTCCGTTAACGTATTTTTCGATATGTTGGAAAGAGAATATTCCAAAAAGAATTATGATCCAGATCGTATTTTTAACGTTGATGAGTCTGGTTTTACTGTGGTGCGCTCGGAAAACCCCCAAGTAATCAGAATTAAGGGTGAGAGACAAATAGAAGCTTTGACAGATGCCGAGCGCGAGTCACTTGTAACTGTTGTATCTGCCATGAGCGCAGGTGGTACTTTTCTATCACCCATGTTAATCTTTAATAAAAATGATATAAACAATGTTGTATTGGATGGTGTTTCATCTGGAACAATGGAATCGAGTGATCCCTCCGGATGGATACAACCAAATCATTTCACGCAATGGTTCGAACACTTTATTACAAGTACTAATCCTTCAGCTGAATCCCCTGTCATGCTTATTCTTGATGGCAACTATTCGCAGTCTAGGAATGTCGATATAATTGACCTTGCTAGAGAGAATCATGTAACCATAATAAGTCAGCCACATCAGAACCATCAGCCTATTGATAAAACGTTTATAGGAGAATTGAAGGCACAGTATACTGAAGAAGTGCGTCAGTTTTACGCAGAAAATGATCGGGATCTTACAGCTTACGATATTGCTCAAATATTTGGAAAGGTCTATGAGAGTTCTCAGAGTCTTGAAGTGGCCATAAACGGATTCCGACTTACTGGTATTTACCCTTTGAACAGATGCATTTTTACTGACTCTGACTTCGCAGGAGTTATTGAGGTTGCCCTTTCTAAATAA
- Protein Sequence
- MREGRLSWSTRAMIEAVKAVRAKTMGVSRASKYYNVPKTSLHNFVKTNLPAEVVVKKKIPKTIKINRRPDTILPSILEKHLVKYLVIIKKTYRDLTRTDVERIACQLATRHGIDHPFIDEAAGQIWLDDFLNRYNDNLSNYVSFAKSESTDSVNVFFDMLEREYSKKNYDPDRIFNVDESGFTVVRSENPQVIRIKGERQIEALTDAERESLVTVVSAMSAGGTFLSPMLIFNKNDINNVVLDGVSSGTMESSDPSGWIQPNHFTQWFEHFITSTNPSAESPVMLILDGNYSQSRNVDIIDLARENHVTIISQPHQNHQPIDKTFIGELKAQYTEEVRQFYAENDRDLTAYDIAQIFGKVYESSQSLEVAINGFRLTGIYPLNRCIFTDSDFAGVIEVALSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -