Ttri007707.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- lola
- Assembly
- GCA_905220615.1
- Location
- HG992305.1:20048714-20058088[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7 5.4e+03 -2.5 0.0 29 36 302 310 302 311 0.79 2 2 2.6e-16 3e-13 49.5 0.0 3 44 349 391 348 392 0.94
Sequence Information
- Coding Sequence
- ATGGCTTTCACTCCCACGGATATTGTAGAACAGACCTATACATCGAGTGGGACACGTCTATGCCTCAAATGGAACAATCACCAGCCAAACTTCATATCTACATTCACAACATTGCTCAACACTGGTGTGCTGTTGGACGTGACACTTGCGGCTGAGGGGCGTCAATTGCAGGCACATAAACTTGTTTTGTGCGCTTGTAGTCCATTCTTTTATGATCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACTGGTCAATTTTATGTACTATGGGGAGGTAGTAGTCTCACAAGAACTATTTCCAAAACTATTAGAAACGGCGAAATATTTAAATATAAAGGGGCTGACACACGTTGGCGACTGTATGACAACTGAAATAGACACTATGCCTGAACCACCCCCAAAACGGAATGGAGTTAATATTGGAGAAGCTTCATCTCCCCCAGATCGCGACGCAAATACAATGAATGATATCGATCGTGTACGTAAACCTGCATCTACTACGGAATCGGATGAAAGTTTACCTCTGTTTCTCCAATATGCTTCAGACACTCCATGTCCTCCAGATATTTTACCCCAAGATTCCAATATTCCAAAGGATGATCCCGATCGTGTACGTAAAGCTGCGTCTTCTGCGGAATCTTCACACGAATCGGATGAAAGTTTGCCACTGTTTTCCACTTGGTCTCTGACACCCCAGACAATGCCTGTAAATCCAAACGCTGGCGGAAACCAAGACGCTCACAAACGGAAACCTGAAGCACGCCCAAAATTGCCAGAAGTTAATATTGGAGATACACCATCTTCTCATATTTCATTCGAGGATTCTGATATTTCAGAGAATGAGCCTGAGTCTTTACGTGATCCTGCGTCTACTTTGGAATCTGCACGTTTTCCACCATTGCCACGTTTTTTGCACGAAACAATGCCCGTGAATCGAAAAAACTTCGCTAACGGAAACCAAGGAGCTTTGAAACGGAAGCGCTCCTACAATCCCCAGGCCGCTGAAAATTTCCAAAAGGCCCTTGAAGCTGTCCGGGTTGGAGGCATTGGATTTTGCAAAGCGGCACGGATTTACGGAGTTAATAATAGAACTTTGTGGTTGGAGTACCGCAAATTGGGTTACCCAGTACACAGAAAGAGTATCAGAGGGAAGAAGGCCGAAGCAAGTAATGGTGAAAATATAAATATATCAGAATTTATGTGGTTACTAAGATGA
- Protein Sequence
- MAFTPTDIVEQTYTSSGTRLCLKWNNHQPNFISTFTTLLNTGVLLDVTLAAEGRQLQAHKLVLCACSPFFYDLXXXXXXXXXXXXXXXXXXXXXXTLVNFMYYGEVVVSQELFPKLLETAKYLNIKGLTHVGDCMTTEIDTMPEPPPKRNGVNIGEASSPPDRDANTMNDIDRVRKPASTTESDESLPLFLQYASDTPCPPDILPQDSNIPKDDPDRVRKAASSAESSHESDESLPLFSTWSLTPQTMPVNPNAGGNQDAHKRKPEARPKLPEVNIGDTPSSHISFEDSDISENEPESLRDPASTLESARFPPLPRFLHETMPVNRKNFANGNQGALKRKRSYNPQAAENFQKALEAVRVGGIGFCKAARIYGVNNRTLWLEYRKLGYPVHRKSIRGKKAEASNGENINISEFMWLLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01452512;
- 90% Identity
- iTF_01452512;
- 80% Identity
- iTF_01452512;